API for VCCRI/Sierra
PolyA counting and differential transcript usage analysis for scRNA-seq data
| Global functions | |
|---|---|
| AggregatePeakCounts | Man page Source code |
| AnnotatePeaksFromGTF | Man page Source code |
| BaseComposition | Man page Source code |
| CountPeaks | Man page Source code |
| DUTest | Man page Source code |
| DetectAEU | Man page Source code |
| DetectUTRLengthShift | Man page Source code |
| FindPeaks | Man page Source code |
| GetExpressedPeaks | Man page Source code |
| GetRelativeExpression | Man page Source code |
| MergePeakCoordinates | Man page Source code |
| NewPeakSCE | Man page Source code |
| NewPeakSeurat | Man page Source code |
| PeakSeuratFromTransfer | Man page Source code |
| PlotCoverage | Man page Source code |
| PlotRelativeExpressionBox | Man page Source code |
| PlotRelativeExpressionTSNE | Man page Source code |
| PlotRelativeExpressionUMAP | Man page Source code |
| PlotRelativeExpressionViolin | Man page Source code |
| PlotUTRLengthShift | Man page Source code |
| ReadPeakCounts | Man page Source code |
| SelectGenePeaks | Man page Source code |
| SplitBam | Man page Source code |
| annotate_gr_from_gtf | Man page Source code |
| apply_DEXSeq_test_sce | Man page Source code |
| apply_DEXSeq_test_seurat | Man page Source code |
| convert_coord | Source code |
| do_arrow_plot | Man page Source code |
| fit_gaussian | Man page Source code |
| geneToGR | Man page Source code |
| gene_Labels | Man page Source code |
| generate_merged_peak_table | Man page Source code |
| generate_self_merged_peaks | Man page Source code |
| generate_self_similarity_table | Man page Source code |
| generate_similarity_table | Man page Source code |
| get_expressed_peaks_sce | Man page Source code |
| get_expressed_peaks_seurat | Man page Source code |
| get_percent_expression | Source code |
| get_relative_expression_sce | Man page Source code |
| get_relative_expression_seurat | Man page Source code |
| make_exons | Man page Source code |
| make_reference | Man page Source code |
| make_utr3_peak_location_table | Source code |
| merge_bam_coverage | Man page Source code |
| relative_location | Man page Source code |
| rle_to_WIG | Man page Source code |
| seqmonk_file_to_rle | Source code |
| seqmonk_to_rle | Source code |
