Files in SimoneTiberi/BANDITS
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Class_BANDITS_data.R
R/Class_BANDITS_test.R
R/MCMC_Together.R
R/MCMC_Together_MultiGroup.R
R/MCMC_Unique.R
R/MCMC_Unique_MultiGroup.R
R/MCMC_functions.R
R/RcppExports.R
R/create_data.R
R/data_gene_tr_id.R
R/data_input_data.R
R/data_precision.R
R/data_results.R
R/eff_len_compute.R
R/filter_Genes.R
R/filter_transcripts.R
R/infer_only.R
R/infer_only_Together.R
R/load_kallisto_data.R
R/load_salmon_data.R
R/prior_precision.R
R/roxygen_tags.R
R/run.R
R/run_Multigroup.R
R/run_OneGroup.R
README.md
data/gene_tr_id.RData
data/input_data.RData
data/precision.RData
data/results.RData
inst/CITATION
inst/extdata/BANDITS.png
inst/extdata/Homo_sapiens.GRCh38.cdna.all.1.1.10M.fa.gz
inst/extdata/STAR-salmon/sample1/aux_info/eq_classes.txt
inst/extdata/STAR-salmon/sample1/quant.sf
inst/extdata/STAR-salmon/sample2/aux_info/eq_classes.txt
inst/extdata/STAR-salmon/sample2/quant.sf
inst/extdata/STAR-salmon/sample3/aux_info/eq_classes.txt
inst/extdata/STAR-salmon/sample3/quant.sf
inst/extdata/STAR-salmon/sample4/aux_info/eq_classes.txt
inst/extdata/STAR-salmon/sample4/quant.sf
inst/extdata/kallisto/sample1/pseudoalignments.ec
inst/extdata/kallisto/sample1/pseudoalignments.tsv
inst/extdata/kallisto/sample2/pseudoalignments.ec
inst/extdata/kallisto/sample2/pseudoalignments.tsv
inst/extdata/kallisto/sample3/pseudoalignments.ec
inst/extdata/kallisto/sample3/pseudoalignments.tsv
inst/extdata/kallisto/sample4/pseudoalignments.ec
inst/extdata/kallisto/sample4/pseudoalignments.tsv
inst/script/extdata.Rmd
man/BANDITS-package.Rd
man/BANDITS_data-class.Rd
man/BANDITS_test-class.Rd
man/create_data.Rd
man/eff_len_compute.Rd
man/filter_genes.Rd
man/filter_transcripts.Rd
man/gene_tr_id.Rd
man/input_data.Rd
man/plot_precision.Rd
man/precision.Rd
man/prior_precision.Rd
man/results.Rd
man/test_DTU.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/Rcpp_Together.cpp
src/Rcpp_Together_MultiGroup.cpp
src/Rcpp_Unique.cpp
src/Rcpp_Unique_MultiGroup.cpp
tests/testthat.R
tests/testthat/test_create_data.R
tests/testthat/test_eff_len_compute.R
tests/testthat/test_filter_genes.R
tests/testthat/test_filter_transcripts.R
tests/testthat/test_prior_precision.R
tests/testthat/test_test_DTU.R
vignettes/BANDITS.Rmd
vignettes/References.bib
