Man pages for Sharonxiaoyuan/eegc
Engineering Evaluation by Gene Categorization (eegc)
| barplotEnrich | Barplot the enrichResult |
| cate.gene | Categorized genes |
| categorizeGene | Gene Categorization |
| cate.ratio | Expression Difference ratios of categorized genes |
| densityPlot | Quantify Genes and Corresponding ED ratios in Each Category |
| diffGene | Gene Expression Differential Analysis |
| diffgene.genes | Differential genes for three comparisons |
| dotPercentage | Percentage Calculation and Visualization |
| eegc | eegc |
| enrichment | Enrichment Analysis by Hypergeometric Distribution Test |
| expr.filter | Filtered expression data |
| functionEnrich | Funtional Enrichment Analysis |
| goenrich | GO enrichment results |
| grnPlot | Gene Regulatory Network Plot |
| heatmapPlot | Heatmap Plot of Enriched Terms |
| human.gene | Gene regulatory network based human cell/tissue-specific gene... |
| human.grn | Human cell/tissue-specific gene-gene regulation |
| human.tf | Gene regulatory network based human cell/tissue-specific... |
| markers | Marker genes |
| markerScatter | Scatter Plot for Gene Expression |
| mouse.gene | Gene regulatory network based mouse cell/tissue-specific gene... |
| mouse.grn | Mouse cell/tissue-specific gene-gene regulation |
| mouse.tf | Gene regulatory network based mouse cell/tissue-specific... |
| networkAnalyze | Network Topological Analysis |
| SandlerFPKM | RNA-seq data in FPKM A data frame containing 16692 gene in 7... |
| tissueGenes | Cell/Tissue specific gene sets |
| tissueGroup | Tissue mapping to groups |
