Files in RyDe4/ChIPanalyzer
ChIPAnalyzer
ChIPAnalyzer.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/Data.R
R/MethylSearch.R
R/QuadCalc.R
R/Visualization.R
R/runChIPAnalyzer.R
README.Rmd
README.md
inst/CITATION
inst/extdata/FOXA2 Quad Plot.png
inst/extdata/FOXA2_quad_workflow_example.png
inst/extdata/HcfUMethylData.bed
inst/extdata/MAZ_G4_plot_all_quads.png
inst/extdata/MAZ_high_score.bed
inst/extdata/MAZ_high_scores_plot.png
inst/extdata/MAZ_quad_workflow_example.png.png
inst/extdata/MAZ_very_small_test.bed
inst/extdata/methyl_percent_plot.png
inst/shiny-scripts/app.R
man/figures/README-pressure-1.png
man/findQuads.Rd
man/getMethylOverlap.Rd
man/getQuadCoveragePercentage.Rd
man/getQuadMatrix.Rd
man/plotMethylPercentage.Rd
man/plotQuadPosition.Rd
man/runChIPAnalyzer.Rd
tests/testthat.R
tests/testthat/HcfUMethylData.bed
tests/testthat/MAZ_very_small_test.bed
tests/testthat/test-findQuads.R
tests/testthat/test-getMethylOverlap.R
tests/testthat/test-getQuadCoveragePercentage.R
tests/testthat/test-getQuadMatrix.R
tests/testthat/test-methylIntegration1.R
tests/testthat/test-plotMethylPercentage.R
tests/testthat/test-plotQuadPosition.R
tests/testthat/test-quadIntegration.R
vignettes/Analyze_G-quadruplexes.Rmd
vignettes/Analyze_Peak_Methylation.Rmd
vignettes/MAZ_high_scores_plot.png
vignettes/Overview.Rmd
vignettes/Shiny_demo.PNG
vignettes/methyl_plot.png
