validateExperiments: Validate ORFik 'experiment'

In Roleren/ORFik: Open Reading Frames in Genomics

Validate ORFik experiment

Description

Check for valid existing, non-empty and all unique. A good way to see if your experiment is valid.

Usage

validateExperiments(df, library.names = bamVarName(df), validate_libs = TRUE)

Arguments

df	an ORFik experiment
library.names	character vector, names of libraries, default: name_decider(df, naming)
validate_libs	logical, default TRUE. If FALSE, don't check that default files exists (i.e. bam files), useful if you are using pshifted ofst etc and don't have the bams anymore.

Value

invisible(NULL) (Stops if failed)

See Also

Other ORFik_experiment: ORFik.template.experiment(), ORFik.template.experiment.zf(), bamVarName(), create.experiment(), experiment-class, filepath(), libraryTypes(), organism,experiment-method, outputLibs(), read.experiment(), save.experiment()

Roleren/ORFik documentation built on April 12, 2025, 5:31 a.m.