stageNames: Get stage name variants

In Roleren/ORFik: Open Reading Frames in Genomics

Get stage name variants

Description

Used to standardize nomeclature for experiments.
Example: Find timepoints 2 hours, 4 hours etc. Example: If using zebrafish stages as TRUE, 64Cell stage is same as 2 hours post fertilization, so all 2hpf will be converted to 64Cell etc.

Usage

stageNames(zebrafish.stages = FALSE)

Arguments

zebrafish.stages

logical, FALSE. If true, convert time points to stages.

Value

a data.table with 2 columns, the main name, and all name variants of the main name in second column as a list.

References

https://www.mbl.edu/zebrafish/files/2013/03/Kimmel_stagingseries1.pdf

See Also

Other experiment_naming: batchNames(), cellLineNames(), cellTypeNames(), conditionNames(), fractionNames(), inhibitorNames(), libNames(), mainNames(), repNames(), tissueNames()

Roleren/ORFik documentation built on Oct. 19, 2024, 7:37 a.m.