import.bedoc: Load GAlignments object from .bedoc
In Roleren/ORFik: Open Reading Frames in Genomics
View source: R/utils_imports.R
import.bedoc R Documentation
Load GAlignments object from .bedoc
Description
A much faster way to store, load and use bam files.
.bedoc is .bed ORFik, an optimized bed format for coverage reads with
cigar and replicate number.
.bedoc is a text based format with columns (5 maximum):
1. chromosome
2. cigar: (cigar # M's, match/mismatch total)
3. start (left most position)
4. strand (+, -, *)
5. score: duplicates of that read
Usage
import.bedoc(path)
Arguments
path
a character, location on disc (full path)
Details
Positions are 1-based, not 0-based as .bed.
export with export.bedo
Value
GAlignments object
Roleren/ORFik documentation built on Oct. 19, 2024, 7:37 a.m.
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View source: R/utils_imports.R
| import.bedoc | R Documentation |
Load GAlignments object from .bedoc
Description
A much faster way to store, load and use bam files.
.bedoc is .bed ORFik, an optimized bed format for coverage reads with
cigar and replicate number.
.bedoc is a text based format with columns (5 maximum):
1. chromosome
2. cigar: (cigar # M's, match/mismatch total)
3. start (left most position)
4. strand (+, -, *)
5. score: duplicates of that read
Usage
import.bedoc(path)
Arguments
path |
a character, location on disc (full path) |
Details
Positions are 1-based, not 0-based as .bed. export with export.bedo
Value
GAlignments object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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