longtests/testthat/test_PAS2GEF.R
In RJWANGbioinfo/APAlyzer: A toolkit for APA analysis using RNA-seq data
test_that("PAS2GEF works properly", {
download.file(url='ftp://ftp.ensembl.org/pub/release-99/gtf/mus_musculus/Mus_musculus.GRCm38.99.gtf.gz',
destfile='Mus_musculus.GRCm38.99.gtf.gz')
GTFfile="Mus_musculus.GRCm38.99.gtf.gz"
PASREF=PAS2GEF(GTFfile)
refUTRraw=PASREF$refUTRraw
dfIPA=PASREF$dfIPA
dfLE=PASREF$dfLE
expect_true(nrow(refUTRraw)>0)
})
RJWANGbioinfo/APAlyzer documentation built on Dec. 6, 2024, 3:36 p.m.
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test_that("PAS2GEF works properly", {
download.file(url='ftp://ftp.ensembl.org/pub/release-99/gtf/mus_musculus/Mus_musculus.GRCm38.99.gtf.gz',
destfile='Mus_musculus.GRCm38.99.gtf.gz')
GTFfile="Mus_musculus.GRCm38.99.gtf.gz"
PASREF=PAS2GEF(GTFfile)
refUTRraw=PASREF$refUTRraw
dfIPA=PASREF$dfIPA
dfLE=PASREF$dfLE
expect_true(nrow(refUTRraw)>0)
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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