Man pages for QuackenbushLab/pandaR
PANDA Algorithm
| calcDegree | Calculate regulatory network degree |
| calcDegreeDifference | Calculate difference in degrees |
| exportNetwork | Network exporter |
| importPandaMatlab | Panda Matlab importer |
| lioness | Compute LIONESS (Linear Interpolation to Obtain Network... |
| multiplot | Multiple plots |
| panda | Passing Messages between Biological Networks to Refine... |
| pandaR | pandaR: Passing Messages between Biological Networks to... |
| pandaResult | Analysis result from PANDA algorithm on toy data |
| pandaResultPairs | Analysis result from PANDA algorithm on toy data converted... |
| pandaToyData | Toy gene expression, motif, and ppi data |
| plotCommunityDetection | Community detection plot |
| plotGraph | Plot graph |
| plot.panda | Plot.panda |
| plotZ | Comparison of Z scores between two PANDA runs |
| plotZbyTF | Plot Z by TF out-degree quantiles |
| print.panda | print.panda |
| subnetwork | Subnetwork |
| summary.panda | Summary.panda |
| targetedGenes | targetedGenes |
| testMotif | Check motif |
| topedges | Top edges |
| validateNetwork | Compare a panda network with a gold standard |
