R/MethylationTuples.R

In PeteHaitch/MethylationTuples: Tools for analysing methylation patterns at genomic tuples

# TODO: Only import what is needed from each package
#' Tools for analysing methylation patterns at genomic tuples.
#'
#' \pkg{MethylationTuples} provides tools for analysing, managing and 
#' visualising methylation patterns at genomic tuples. These include analyses 
#' of co-methylation and epipolymorphism.
#'
#' Please refer to the vignettes to see how to use the \pkg{MethylationTuples}
#' package.
#'
#' @docType package
#' @name MethylationTuples-package
#' @useDynLib MethylationTuples, .registration = TRUE
#' @import GenomicTuples
#' @import Rcpp
#' @import BiocGenerics
#' @import IRanges
#' @import data.table
#' @import R.utils
#' @import BiocParallel
#' @import Biostrings
#' @import methods
#' @import ggplot2
#' @importFrom Biobase validMsg
#' @importFrom VariantAnnotation readVcf ScanVcfParam
#' @importFrom stats4 plot
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