NEWS.md

In PYangLab/PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data

PhosR 1.9.1

• Bug fixes

PhosR 1.5.2

• Bug fix in plotQC
• Minor improvements in documentations of functions
• Included motif list for other species in KinaseSubstrateScore function
• Added plotting parameters in kinaseSubstrateHeatmap function

PhosR 1.5.1

• Development version

PhosR 1.4.1

• Bug fix in PCA plot variance

PhosR 1.4.0

• BioC release 3.14

PhosR 1.3.1

• Bug fixes in the vignette

PhosR 1.3.0

• Bioconductor development version

PhosR 1.2.1

• Included Cell Report citation
• rainbow colour palette is used for plotQC function

PhosR 1.2.0

• Bioconductor release version

PhosR 1.1.9

• Fixes in documentation, examples and styles to meet BioC requirements

PhosR 1.1.8

• Fixes in documentation and examples to meet BioC requirements

PhosR 1.1.7

• Fixed getSPS to expect residue information.

PhosR 1.1.6

• Included warning signs to creating PhosphoExperiment object without attributes.

PhosR 1.1.5

• Fixed the warning message generated in plotQC for dendrograms. (Warning message: Vectorized input toelement_text()is not officially supported.).

PhosR 1.1.4

• Fixed the parameter of plotQC from cols to grps

PhosR 1.1.3

• Fixed a bug in ptImpute function
• Edited medianScaling documentation to be more specific

PhosR 0.1.5

• Significant updates and addition to the documentation
• Major changes to code writing style to comply with BioC
• Updated TC example data

PYangLab/PhosR documentation built on Nov. 1, 2024, 1:47 p.m.