scripts/Docker_file/install_step2.R

In MASHUOA/HiTMaP: A collection of tools for imaging MS data processing

install.packages("BiocManager")
install.packages("systemfonts")
install.packages("remotes")
install.packages("devtools")
library(devtools)
if (!require(plotly)) remotes::install_github("ropensci/plotly@async")
if (!require(htmlwidgets)) remotes::install_github("ramnathv/htmlwidgets")
install.packages("tidyverse")
install.packages("reshape2")
library(remotes)
BiocManager::install(c("EBImage","ChemmineR","Cardinal"))
BiocManager::install(c( "XVector", "Biostrings", "KEGGREST","cleaver"))
remotes::install_github("sneumann/Rdisop")
BiocManager::install(c("EBImage","ChemmineR","matter","Cardinal"),ask=F)
Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")
remotes::install_github(
  "MASHUOA/HiTMaP",
  force=TRUE,
  upgrade="always",
  verbose=TRUE
)