Files in LieberInstitute/DeconvoBuddies
Helper Functions for LIBD Deconvolution
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/feature_request_template.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/create_cell_colors.R
R/data.R
R/fetch_deconvo_data.R
R/findMarkers_1vAll.R
R/get_mean_ratio.R
R/get_mean_ratio2.R
R/make_test_sce.R
R/plot_composition_bar.R
R/plot_gene_express.R
R/plot_marker_express.R
R/plot_marker_express_ALL.R
R/plot_marker_express_List.R
R/sysdata.rda
R/utils.R
README.Rmd
README.md
codecov.yml
data-raw/HALO_cell_type_proportions.csv
data-raw/RNAScope_prop.R
data-raw/est_prop.R
data-raw/marker_test.R
data-raw/markers_MeanRatio_over2.txt
data-raw/rse_bulk_test.R
data-raw/sce_ab.R
data-raw/sysdata.R
data/RNAScope_prop.rda
data/est_prop.rda
data/marker_test.rda
data/rse_bulk_test.rda
data/sce_ab.rda
dev/01_create_pkg.R
dev/02_git_github_setup.R
dev/03_core_files.R
dev/04_update.R
dev/05_local_BiocCheck.R
inst/CITATION
inst/extdata/marker_stats_1vAll.RData
inst/extdata/metadata.csv
inst/scripts/make-data.R
inst/scripts/make-metadata.R
man/RNAScope_prop.Rd
man/create_cell_colors.Rd
man/dot-get_mean_ratio2.Rd
man/est_prop.Rd
man/fetch_deconvo_data.Rd
man/figures/DeconvoBuddies.png
man/figures/Deconvolution.png
man/figures/Deconvolution_compare_proportions.png
man/figures/README-demo_plot_composition_bar-1.png
man/figures/README-plot_gene_expression-1.png
man/figures/get_mean_ratio.png
man/figures/hockey_plot_anno.png
man/figures/logo.png
man/findMarkers_1vAll.Rd
man/get_mean_ratio.Rd
man/make_test_sce.Rd
man/marker_test.Rd
man/plot_composition_bar.Rd
man/plot_gene_express.Rd
man/plot_marker_express.Rd
man/plot_marker_express_ALL.Rd
man/plot_marker_express_List.Rd
man/rse_bulk_test.Rd
man/sce_ab.Rd
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-get_mean_ratio.R
tests/testthat/test-get_mean_ratio2.R
tests/testthat/test-plot_marker_express.R
vignettes/.gitignore
vignettes/DeconvoBuddies.Rmd
vignettes/Deconvolution_Benchmark_DLPFC.Rmd
vignettes/Marker_Finding.Rmd
vignettes/references.bib
