Man pages for LTLA/SingleR
Reference-Based Single-Cell RNA-Seq Annotation
| aggregateReference | Aggregate reference samples |
| classifySingleR | Classify cells with SingleR |
| combineCommonResults | Combine SingleR results with common genes |
| combineRecomputedResults | Combine SingleR results with recomputation |
| datasets | Reference dataset extractors |
| getClassicMarkers | Get classic markers |
| getDeltaFromMedian | Compute the difference from median |
| matchReferences | Match labels from two references |
| mockData | Mock data for examples |
| plotDeltaDistribution | Plot delta distributions |
| plotMarkerHeatmap | Plot a heatmap of the markers for a label |
| plotScoreDistribution | Plot score distributions |
| plotScoreHeatmap | Plot a score heatmap |
| pruneScores | Prune out low-quality assignments |
| rebuildIndex | Rebuild the index |
| SingleR | Annotate scRNA-seq data |
| trainSingleR | Train the SingleR classifier |
