Files in JonathanIrish/MEMv3
Marker Enrichment Modeling (MEM)
.Rbuildignore
.gitignore
00_install_tools.Rmd
01_cGVHD_example.Rmd
01_cGVHD_example.html
02_bead_example.Rmd
02_bead_example.html
03_blood_cell_PBMC_example.Rmd
03_blood_cell_PBMC_example.html
DESCRIPTION
EULA-MEM.txt
LICENSE.MD
MEM README.txt
MEM.Rproj
NAMESPACE
R/IQR_thresh.R
R/MEM_RMSD.R
R/MEM_function.R
R/add_cluster_ID.R
R/add_fileID_to_clusterID.R
R/build_heatmaps.R
R/choose_markers.R
R/choose_reference_pop.R
R/create_labels.R
R/create_labels_txt.R
R/format_data.R
R/get_files.R
R/rename_markers.R
R/zero_reference.R
README.md
data/MEM_matrix.Rdata
data/MEM_values.RData
data/PBMC.RData
datafiles/MCBead/ALL_2018_mc_cbead_300_Ungated_viSNE_Ungated.fcs
datafiles/PBMC/CD4Tcells_PBMC.fcs
datafiles/PBMC/CD8Tcells_PBMC.fcs
datafiles/PBMC/DCs_PBMC.fcs
datafiles/PBMC/IgMnegBcells_PBMC.fcs
datafiles/PBMC/IgMposBcells_PBMC.fcs
datafiles/PBMC/Monocytes_PBMC.fcs
datafiles/PBMC/NKcells_PBMC.fcs
datafiles/cGVHD/112018_cGVHD_Clustering_Data_FlowRepository.csv
datafiles/cGVHD/cGVHD Clustering Data FlowRepository_Ungated.fcs
installing.txt
intro.txt
man/MEM.Rd
man/MEM_RMSD.Rd
man/MEM_values.Rd
man/PBMC.Rd
man/build.heatmaps.Rd
pdfs/nihms-838883.pdf
pdfs/nihms912131.pdf
vignettes/Intro_to_Marker_Enrichment_Modeling_Analysis.Rmd
