optimizeReads: Find optimized subset of valid reads
In JokingHero/ORFik: Open Reading Frames in Genomics
optimizeReads R Documentation
Find optimized subset of valid reads
Description
Keep only the ones that overlap within the grl ranges.
Also sort them in the end
Usage
optimizeReads(grl, reads)
Arguments
grl
a GRangesList or GRanges object
reads
a GRanges, GAlignment or GAlignmentPairs object
Value
the reads as GRanges, GAlignment or GAlignmentPairs
See Also
Other utils:
bedToGR(),
convertToOneBasedRanges(),
export.bed12(),
export.bigWig(),
export.fstwig(),
export.wiggle(),
fimport(),
findFa(),
fread.bed(),
readBam(),
readBigWig(),
readWig()
JokingHero/ORFik documentation built on Oct. 21, 2024, 11:42 a.m.
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| optimizeReads | R Documentation |
Find optimized subset of valid reads
Description
Keep only the ones that overlap within the grl ranges. Also sort them in the end
Usage
optimizeReads(grl, reads)
Arguments
grl |
a |
reads |
a GRanges, GAlignment or GAlignmentPairs object |
Value
the reads as GRanges, GAlignment or GAlignmentPairs
See Also
Other utils:
bedToGR(),
convertToOneBasedRanges(),
export.bed12(),
export.bigWig(),
export.fstwig(),
export.wiggle(),
fimport(),
findFa(),
fread.bed(),
readBam(),
readBigWig(),
readWig()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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