getGAlignments: Internal GAlignments loader from fst data.frame
In JokingHero/ORFik: Open Reading Frames in Genomics
getGAlignments R Documentation
Internal GAlignments loader from fst data.frame
Description
Internal GAlignments loader from fst data.frame
Usage
getGAlignments(df, seqinfo = NULL)
Arguments
df
a data.frame with columns minimum 4 columns:
seqnames, start ("pos" in final GA object), cigar and strand.
Additional columns will be assigned as meta columns
seqinfo
Seqinfo object, defaul NULL (created from ranges).
Add to avoid warnings later on differences in seqinfo.
Value
GAlignments object
JokingHero/ORFik documentation built on Oct. 21, 2024, 11:42 a.m.
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| getGAlignments | R Documentation |
Internal GAlignments loader from fst data.frame
Description
Internal GAlignments loader from fst data.frame
Usage
getGAlignments(df, seqinfo = NULL)
Arguments
df |
a data.frame with columns minimum 4 columns:
seqnames, start ("pos" in final GA object), cigar and strand. |
seqinfo |
Seqinfo object, defaul NULL (created from ranges). Add to avoid warnings later on differences in seqinfo. |
Value
GAlignments object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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