Files in JasonHackney/ReportingTools

Tools for making reports in various formats

R/AllClasses.R R/AllGenerics.R R/AllOldClasses.R R/DESeqFunctions.R R/DGEExact-methods.R R/DGELRT-methods.R R/GeneSetCollection-methods.R R/HTMLReport-methods.R R/HyperGResult-methods.R R/Link.R R/MArrayLM-methods.R R/ReportHandlers-method.R R/ReportHandlers.R R/Utilities.R R/accessor-methods.R R/addReportColumns-methods.R R/annotate.genes.R R/check.eg.ids.R R/data.frame-methods.R R/finish-methods.R R/genePagesFunctions.R R/getDefaultColumnClasses-methods.R R/grabScriptAndStyle.R R/htmlReportRef-methods.R R/internal.R R/makeDESeqDF.R R/methods.R R/objectToHTML-methods.R R/openPage.R R/plotting_functions.R R/publish-methods.R R/readReport.R R/shinyFunctions.R R/show-methods.R R/toReportDF-methods.R R/trellis-methods.R R/zzz.R inst/examples/LinkTest.R inst/examples/clobberstart.R inst/examples/customizeVignette.Rmd inst/examples/doRMDtest.R inst/examples/extensibility.Rmd inst/examples/extensibilityTest.R inst/examples/indexTest.R inst/examples/inlineTest.R inst/examples/knitrformattest.Rmd inst/examples/marraylmtest.Rmd inst/examples/pfamtest.Rmd inst/examples/posInsertion.R inst/examples/shinyExample/ReadMe.R inst/examples/shinyExample/server.R inst/examples/shinyExample/ui.R inst/examples/testDGEExact.R inst/examples/testDOM.R inst/examples/testMicro.R inst/examples/testReadReport.R inst/examples/testRmd.Rmd inst/unitTests/test_Annotation.R inst/unitTests/test_DESeqDataSet.R inst/unitTests/test_DESeqResults.R inst/unitTests/test_DataFrame.R inst/unitTests/test_GeneSets.R inst/unitTests/test_HyperGResults.R inst/unitTests/test_Link.R inst/unitTests/test_MArrayLM.R inst/unitTests/test_edgeR.R inst/unitTests/test_handlerConst.R inst/unitTests/test_knitr.R inst/unitTests/test_reportmanip.R inst/unitTests/test_testObjectCreation.R man/BaseReportType-class.Rd man/CSVFile-class.Rd man/CSVFile.Rd man/DataPackage-class.Rd man/DataPackage.Rd man/HTMLReport-class.Rd man/HTMLReport.Rd man/HTMLReportRef-class.rd man/Link.Rd man/ReportHandlers-class.Rd man/addReportColumns-methods.Rd man/custHeaderPanel.Rd man/filename-methods.Rd man/finish-methods.Rd man/mockRnaSeqData.Rd man/objectToHTML-methods.Rd man/publish-methods.Rd man/readReport.Rd man/reporting.theme.Rd man/reporting.theme.alternate.Rd man/toReportDF-methods.Rd man/validConnection.Rd tests/runTests.R vignettes/knitr.Rmd