NEWS.md

In JEFworks-Lab/STdeconvolve: Reference-free Cell-Type Deconvolution of Multi-Cellular Spatially Resolved Transcriptomics Data

Version 1.3.2 (2024-11-07)

• Remove liger as a dependency. Replace with fgsea Korotkevich G, Sukhov V, Sergushichev A (2019). “Fast gene set enrichment analysis.” bioRxiv. doi:10.1101/060012, http://biorxiv.org/content/early/2016/06/20/060012.

Version 1.3.1 (2022-12-10)

• Based on Pull requests after being published, made some minor changes to help guide users:
• Added new vignette: Discussion and examples of processing multiple datasets together or separately
• Minor aesthetic updates to VizAllTopics(). Now lwd = 0.01 and "Topics" changes to "CellTypes"
• Emphasis that functions simulateBregmaSpots() and buildBregmaCorpus() to generate MPOA multi-cellular spots are on the devel branch

Version 0.99.12 (2022-04-22)

• Accepted into Bioconductor 3.15 devel branch
• Official paper out in Nat Comms 2022-04-29 !!

Version 0.99.10 (2022-04-13)

• R version for Bioconductor and package branch: (>= 4.1)
• R version in devel branch in GitHub: (>= 3.6)

Changes in version 0.99.0 (2022-02-15)

• Submitted to Bioconductor

JEFworks-Lab/STdeconvolve documentation built on Nov. 14, 2024, 7:24 p.m.