R/reexports.R

In HuaZou/MicrobiomeAnalysis: Data analysis toolkits in metagenomics

#' @importMethodsFrom phyloseq ntaxa
#' @importFrom phyloseq ntaxa
#' @export
#' @exportMethod ntaxa
phyloseq::ntaxa

#' @importMethodsFrom phyloseq nsamples
#' @importFrom phyloseq nsamples
#' @export
#' @exportMethod nsamples
phyloseq::nsamples

#' @importMethodsFrom phyloseq otu_table
#' @importFrom phyloseq otu_table
#' @export
#' @exportMethod otu_table
phyloseq::otu_table

#' @importMethodsFrom phyloseq sample_data
#' @importFrom phyloseq sample_data
#' @export
#' @exportMethod sample_data
phyloseq::sample_data

#' @importMethodsFrom phyloseq tax_table
#' @importFrom phyloseq tax_table
#' @export
#' @exportMethod tax_table
phyloseq::tax_table

#' @importMethodsFrom phyloseq taxa_names
#' @importFrom phyloseq taxa_names
#' @export
#' @exportMethod taxa_names
phyloseq::taxa_names

#' @export
#' @exportMethod sample_names
#' @importFrom phyloseq sample_names
#' @importMethodsFrom phyloseq sample_names
phyloseq::sample_names


#' @importFrom magrittr %>%
#' @export
magrittr::`%>%`

#' @importFrom phyloseq import_qiime
#' @export
phyloseq::import_qiime

#' @importFrom phyloseq import_mothur
#' @export
phyloseq::import_mothur

#' @importFrom phyloseq import_biom
#' @export
phyloseq::import_biom

#' @importFrom dplyr filter
#' @export
dplyr::filter

#' @importFrom dplyr count
#' @export
dplyr::count

#' @importFrom dplyr lag
#' @export
dplyr::lag

#' @importFrom dplyr select
#' @export
dplyr::select

#' @importFrom dplyr mutate
#' @export
dplyr::mutate

#' @importFrom dplyr group_by
#' @export
dplyr::group_by

#' @importFrom dplyr ungroup
#' @export
dplyr::ungroup

#' @importFrom dplyr rename
#' @export
dplyr::rename

#' @importFrom dplyr distinct
#' @export
dplyr::distinct

#' @importFrom dplyr arrange
#' @export
dplyr::arrange

#' @importFrom dplyr pull
#' @export
dplyr::pull

#' @importFrom dplyr slice
#' @export
dplyr::slice

#' @importFrom dplyr left_join
#' @export
dplyr::left_join