HowardChao/RNASeqR: RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
This R package is designed for case-control RNA-Seq analysis (two-group). There are six steps: "RNASeqRParam S4 Object Creation", "Environment Setup", "Quality Assessment", "Reads Alignment & Quantification", "Gene-level Differential Analyses" and "Functional Analyses". Each step corresponds to a function in this package. After running functions in order, a basic RNASeq analysis would be done easily.
Getting started
Browse package contents
Package details |
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| Author | Kuan-Hao Chao |
| Bioconductor views | Alignment Clustering DataImport DifferentialExpression ExperimentalDesign FunctionalPrediction GO GeneExpression GeneSetEnrichment Genetics ImmunoOncology Infrastructure KEGG Normalization Pathways QualityControl RNASeq Sequencing Visualization |
| Maintainer | Kuan-Hao Chao <ntueeb05howard@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.15.1 |
| URL | https://github.com/HowardChao/RNASeqR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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