TSSPlot: Plot signal enrichment around TSSs
In Honchkrow/SignacSlim: The slim version of signac
View source: R/visualization.R
TSSPlot R Documentation
Plot signal enrichment around TSSs
Description
Plot the normalized TSS enrichment score at each position relative to the
TSS. Requires that TSSEnrichment has already been run on the
assay.
Usage
TSSPlot(object, assay = NULL, group.by = NULL, idents = NULL)
Arguments
object
A Seurat object
assay
Name of the assay to use. Should have the TSS enrichment
information for each cell
already computed by running TSSEnrichment
group.by
Set of identities to group cells by
idents
Set of identities to include in the plot
Value
Returns a ggplot2 object
Examples
print("see https://satijalab.org/signac/reference/tssplot")
Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.
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View source: R/visualization.R
| TSSPlot | R Documentation |
Plot signal enrichment around TSSs
Description
Plot the normalized TSS enrichment score at each position relative to the
TSS. Requires that TSSEnrichment has already been run on the
assay.
Usage
TSSPlot(object, assay = NULL, group.by = NULL, idents = NULL)
Arguments
object |
A Seurat object |
assay |
Name of the assay to use. Should have the TSS enrichment
information for each cell
already computed by running |
group.by |
Set of identities to group cells by |
idents |
Set of identities to include in the plot |
Value
Returns a ggplot2 object
Examples
print("see https://satijalab.org/signac/reference/tssplot")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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