fromDataFile.ChipEffectFile: Retrieve an existing CEL file, or create from CDF template if...

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Retrieve an existing CEL file, or create from CDF template if missing

Description

Retrieve an existing CEL file, or create from CDF template if missing.

Usage

## Static method (use this):
## ChipEffectFile$fromDataFile(df=NULL, filename=sprintf("%s,chipEffects.CEL",
##   getFullName(df)), path, name=getName(df), cdf=NULL, ..., verbose=FALSE)

## Don't use the below:
## S3 method for class 'ChipEffectFile'
fromDataFile(static, df=NULL, filename=sprintf("%s,chipEffects.CEL", getFullName(df)),
  path, name=getName(df), cdf=NULL, ..., verbose=FALSE)

Arguments

static
df
filename	The filename of the CEL file.
path	The path to the directory where to find/create the CEL file.
name	The name of the array to be stored in the CEL header.
cdf	The template AffymetrixCdfFile used for creating a CEL file from scratch.
...	Passed to createCel.
verbose	See Verbose.

Value

Returns a ChipEffectFile.

Author(s)

Henrik Bengtsson

See Also

allocateFromCdf() of AffymetrixCelFile. For more information see ChipEffectFile.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.