fitQuantileNormFcn.AffymetrixCelFile: Fits quantile normalization functions for the arrays in the...

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Fits quantile normalization functions for the arrays in the data set

Description

Fits quantile normalization functions for the arrays in the data set.

Usage

## S3 method for class 'AffymetrixCelFile'
fitQuantileNormFcn(this, yTarget, subset=NULL, ..., spar=NULL, nknots=1024,
  verbose=FALSE)

Arguments

yTarget	The target probe signals.
subset	An optional numeric vector specifying the indices of the subset of probes to be used to fit the normalization function.
spar, nknots	Control parameters passed to smooth.spline.
...	Not used.
verbose	See Verbose.

Value

Returns a normalization function.

Author(s)

Henrik Bengtsson

See Also

For more information see AffymetrixCelFile.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.