SnpChipEffectGroupMerge: The SnpChipEffectGroupMerge class

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

The SnpChipEffectGroupMerge class

Description

Package: aroma.affymetrix
Class SnpChipEffectGroupMerge

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--SnpChipEffectGroupMerge

Directly known subclasses:

public static class SnpChipEffectGroupMerge
extends ChipEffectGroupMerge

This class represents a method that merges SNP chip effects across groups unit by unit.

Usage

SnpChipEffectGroupMerge(..., mergeStrands=FALSE, mean=c("arithmetic", "geometric"))

Arguments

...	Arguments passed to the constructor of ChipEffectGroupMerge.
mergeStrands	If TRUE, group strands are merged.
mean	A character string specifying what type of averaging should be applied.

Fields and Methods

Methods:

	getMergeFunction	-

Methods inherited from ChipEffectGroupMerge:
getCdf, getMergeFunction, getParameters, process, setMergeFunction

Methods inherited from ChipEffectTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.