ChipEffectGroupMerge: The ChipEffectGroupMerge class

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

The ChipEffectGroupMerge class

Description

Package: aroma.affymetrix
Class ChipEffectGroupMerge

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge

Directly known subclasses:
SnpChipEffectGroupMerge

public static class ChipEffectGroupMerge
extends ChipEffectTransform

This class represents a method that merges chip effects across groups unit by unit.

Usage

ChipEffectGroupMerge(dataSet=NULL, fcn=NULL, ...)

Arguments

dataSet	A ChipEffectSet.
fcn	A function used to "merge" groups.
...	Additional arguments passed to the constructor of ChipEffectTransform.

Fields and Methods

Methods:

	getCdf	-
	getMergeFunction	-
	process	-
	setMergeFunction	-

Methods inherited from ChipEffectTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.