MRcounts: Accessor for the counts slot of a MRexperiment object
In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
MRcounts R Documentation
Accessor for the counts slot of a MRexperiment object
Description
The counts slot holds the raw count data representing (along the rows) the
number of reads annotated for a particular feature and (along the columns)
the sample.
Usage
MRcounts(obj, norm = FALSE, log = FALSE, sl = 1000)
Arguments
obj
a MRexperiment object.
norm
logical indicating whether or not to return normalized counts.
log
TRUE/FALSE whether or not to log2 transform scale.
sl
The value to scale by (default=1000).
Value
Normalized or raw counts
Author(s)
Joseph N. Paulson, jpaulson@umiacs.umd.edu
Examples
data(lungData)
head(MRcounts(lungData))
HCBravoLab/metagenomeSeq documentation built on March 17, 2024, 3:21 p.m.
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| MRcounts | R Documentation |
Accessor for the counts slot of a MRexperiment object
Description
The counts slot holds the raw count data representing (along the rows) the number of reads annotated for a particular feature and (along the columns) the sample.
Usage
MRcounts(obj, norm = FALSE, log = FALSE, sl = 1000)
Arguments
obj |
a |
norm |
logical indicating whether or not to return normalized counts. |
log |
TRUE/FALSE whether or not to log2 transform scale. |
sl |
The value to scale by (default=1000). |
Value
Normalized or raw counts
Author(s)
Joseph N. Paulson, jpaulson@umiacs.umd.edu
Examples
data(lungData)
head(MRcounts(lungData))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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