GuangchuangYu/clusterProfiler: A universal enrichment tool for interpreting omics data

This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.

Getting started

Package details

Bioconductor views Annotation Clustering GO GeneSetEnrichment KEGG MultipleComparison Pathways Reactome Visualization
MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
LicenseArtistic-2.0
Version4.15.0
URL https://yulab-smu.top/contribution-knowledge-mining/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("GuangchuangYu/clusterProfiler")
GuangchuangYu/clusterProfiler documentation built on Oct. 31, 2024, 9:26 a.m.