Man pages for GoekeLab/bambu
Context-Aware Transcript Quantification from Long Read RNA-Seq data
| bambu | long read isoform reconstruction and quantification |
| compareTranscripts | compare alternatively-spliced transcripts |
| plotBambu | plot.bambu |
| prepareAnnotations | prepare reference annotations for long read RNA-Seq analysis... |
| readFromGTF | convert a GTF file into a GRangesList |
| trainBambu | Function to train a model for use on other data |
| transcriptToGeneExpression | transcript to gene expression |
| writeBambuOutput | Write Bambu results to GTF and transcript/gene-count files |
| writeToGTF | write GRangeslist into GTF file |
