In GaelleLefort/ASICSdata: Example of 1D NMR spectra data for ASICS package
Overview of the ASICSdata package
The ASICSdata package contains an example of 1D NMR spectra for use with the
ASICS package.
It includes a subset of the public dataset from Salek et al. (2007). The
experiment has been designed to improve the understanding of early stage of
type 2 diabetes mellitus (T2DM) development. The current dataset consists of
$^1$H-NMR human metabolome obtained from 25 healthy volunteers and 25 T2DM
patients. Raw 1D Bruker spectral data files were found in the MetaboLights
database (https://www.ebi.ac.uk/metabolights/, study MTBLS1).
References
Salek R.M., Maguire M.L., Bentley E., Rubtsov D.V., Hough T., Cheeseman M.,
Nunez D., Sweatman B.C., Haselden J.N., Cox R.D., Connor S.C., Griffin J.L.
(2007). A metabolomic comparison of urinary changes in type 2 diabetes in mouse,
rat, and human. Physiological genomics, 29(2), 99-108. DOI:
10.1152/physiolgenomics.00194.2006
Tardivel P., Canlet C., Lefort G., Tremblay-Franco M., Debrauwer L., Concordet
D., Servien R. (2017). ASICS: an automatic method for identification and
quantification of metabolites in complex 1D 1H NMR spectra. Metabolomics,
13(10), 109. DOI: 10.1007/s11306-017-1244-5
GaelleLefort/ASICSdata documentation built on May 26, 2019, 7:26 a.m.
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Overview of the ASICSdata package
The ASICSdata package contains an example of 1D NMR spectra for use with the
ASICS package.
It includes a subset of the public dataset from Salek et al. (2007). The experiment has been designed to improve the understanding of early stage of type 2 diabetes mellitus (T2DM) development. The current dataset consists of $^1$H-NMR human metabolome obtained from 25 healthy volunteers and 25 T2DM patients. Raw 1D Bruker spectral data files were found in the MetaboLights database (https://www.ebi.ac.uk/metabolights/, study MTBLS1).
References
Salek R.M., Maguire M.L., Bentley E., Rubtsov D.V., Hough T., Cheeseman M., Nunez D., Sweatman B.C., Haselden J.N., Cox R.D., Connor S.C., Griffin J.L. (2007). A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human. Physiological genomics, 29(2), 99-108. DOI: 10.1152/physiolgenomics.00194.2006
Tardivel P., Canlet C., Lefort G., Tremblay-Franco M., Debrauwer L., Concordet D., Servien R. (2017). ASICS: an automatic method for identification and quantification of metabolites in complex 1D 1H NMR spectra. Metabolomics, 13(10), 109. DOI: 10.1007/s11306-017-1244-5
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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