vignettes/installLipidQ.md

In ELELAB/lipidQ: Lipidomics Analysis Tool

title: "Install LipidQ" author: "André Vidas Olsen" date: "2018-04-15" output: html_document vignette: > %\VignetteIndexEntry{Vignette Title} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8}

Introduction

This vignette will describe how to install LipidQ on a computer. In order to install LipidQ, the user needs to have installed R first on the computer. For convenience, it is also recommended to install R studio. The ComplexHeatmap package needs to be installed in R in order for LipidQ to work. This can be done in R studio, by typing the following in the command line:

source("https://bioconductor.org/biocLite.R")

biocLite("ComplexHeatmap")

Install LipidQ from Bioconductor

The easist way to install LipidQ is to open R/RStudio and type the following two commands in the command line:

source("https://bioconductor.org/biocLite.R")

biocLite("lipidQ")

Install LipidQ from binary/source file

To install LipidQ from source, open R/RStudio and type the following in the command line:

install.packages("path-to-file", repos = NULL, type="source")

, where "path-to-file" is the path to the source file. For example:

install.packages("../lipidQ_0.1_R_x86_64-pc-linux-gnu.tar.gz", repos = NULL, type="source")

ELELAB/lipidQ documentation built on Feb. 24, 2020, 12:54 a.m.