Files in ComputationalProteomicsUnit/Pbase
Manipulating and exploring protein and proteomics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AAStringSet-functions.R
R/AllClasses.R
R/AllGenerics.R
R/GRanges.R
R/Proteins-functions.R
R/Proteins-methods.R
R/environments.R
R/fasta-functions.R
R/heavylabels-functions.R
R/params.R
R/peptides-functions.R
R/plotting.R
R/updateObject.R
R/utils.R
R/vigfigs.R
R/zzz.R
README.md
data/p.rda
data/pms.rda
inst/extdata/01_test_database.fasta
inst/extdata/04_test_database.fasta
inst/extdata/HUMAN_2015_02_selected.fasta
inst/extdata/Thermo_Hela_PRTC_selected.mgf.gz
inst/extdata/Thermo_Hela_PRTC_selected.mzid
inst/extdata/heavylabels_groundtruth.csv
inst/extdata/heavylabels_proteins_of_interest.fasta
inst/scripts/makep.R
inst/vignettes/Pbase-with-ensembldb.Rmd
inst/vignettes/ensucsc.Rmd
inst/vignettes/mapping.Rmd
man/Pparams-class.Rd
man/Proteins-class.Rd
man/calculateHeavyLabels.Rd
man/etrid2grl.Rd
man/isReverse.Rd
man/p.Rd
man/plotAsAnnotationTrack.Rd
man/proteinCoding-methods.Rd
sandbox/Makefile
sandbox/S00-play-with-proteins.R
sandbox/S01-UniProtws.R
sandbox/S02-compare-AAStringSetList-vs-IRangesList.R
sandbox/S03-coverage-mzID.R
sandbox/S03-proteinCoverage-example.R
sandbox/S04-BSA-example.R
sandbox/code.R
sandbox/overhang/proteins_of_interest.fasta
sandbox/overhang/result_26_09_13.csv
sandbox/overhang/test_heavylabels.R
tests/testthat.R
tests/testthat/test_AAStringSet-functions.R
tests/testthat/test_Proteins-class.R
tests/testthat/test_Proteins-ensembldb.R
tests/testthat/test_Proteins-functions.R
tests/testthat/test_Proteins-methods.R
tests/testthat/test_fasta-functions.R
tests/testthat/test_heavylabels-functions.R
tests/testthat/test_peptides-functions.R
tests/testthat/test_utils.R
vignettes/Pbase-data.Rmd
