CenterForStatistics-UGent/RCM: Fit row-column association models with the negative binomial distribution for the microbiome
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DimensionReduction Metagenomics Microbiome Visualization |
| Maintainer | |
| License | GPL-2 |
| Version | 1.11.4 |
| URL | https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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