In C3BI-pasteur-fr/UTechSCB-SCHNAPPs: Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data

# devtools::install_github("hadley/requirements")

# we need to copy some sources as req_dir is not exported

flat_map_chr <- function(x, f, ...) {
  if (length(x) == 0) {
    character()
  } else {
    unlist(lapply(x, f, ...))
  }
}

char_or_sym <- function(x) {
  if (is.character(x)) {
    x
  } else if (is.symbol(x)) {
    as.character(x)
  } else {
    character()
  }
}

find_pkgs_rec <- function(x) {
  if (is_syntactic_literal(x) || is_symbol(x)) {
    return(character())
  }

  if (is_pairlist(x) || is.expression(x)) {
    return(flat_map_chr(as.list(x), find_pkgs_rec))
  }

  if (is_call(x, c("::", ":::"))) {
    char_or_sym(x[[2]])
  } else if (is_call(x, c("library", "require"))) {
    x <- call_standardise(x, env = baseenv())
    if (isTRUE(x$character.only) || identical(x$character.only, quote(T))) {
      if (is.character(x$package)) {
        x$package
      } else {
        character()
      }
    } else {
      char_or_sym(x$package)
    }
  } else if (is_call(x, c("requireNamespace", "loadNamespace"))) {
    x <- call_standardise(x, env = baseenv())
    char_or_sym(x$package)
  } else {
    flat_map_chr(as.list(x), find_pkgs_rec)
  }

}

req_dir <- function(path = ".") {
  files <- dir(path, recursive = TRUE, include.dirs = FALSE, full.names = TRUE)

  sort(unique(flat_map_chr(files, req_file)))
}
library(requirements)

packs = req_dir("inst/app")
lices = matrix(unlist(lapply(packs, FUN = function(x)c(x, packageDescription(x, fields="License")))),ncol = 2,byrow = T)

write.table(lices, file = "inst/develo/licensesList.txt", quote = F, sep = ":\t", row.names = F, col.names = F)

C3BI-pasteur-fr/UTechSCB-SCHNAPPs documentation built on Jan. 12, 2025, 1:16 p.m.