tests/testthat/apps/masks_app_ondisk/app.R
In BodenmillerGroup/SingleCellMapper: Visualization of highly multiplexed imaging data in R
library(cytomapper)
data("pancreasSCE")
data("pancreasMasks")
cur_path <- tempdir()
on.exit(unlink(cur_path))
cur_Masks <- CytoImageList(pancreasMasks, on_disk = TRUE, h5FilesPath = cur_path)
cytomapperShiny(object = pancreasSCE, mask = cur_Masks,
cell_id = "CellNb", img_id = "ImageNb")
BodenmillerGroup/SingleCellMapper documentation built on July 2, 2024, 4:31 p.m.
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library(cytomapper)
data("pancreasSCE")
data("pancreasMasks")
cur_path <- tempdir()
on.exit(unlink(cur_path))
cur_Masks <- CytoImageList(pancreasMasks, on_disk = TRUE, h5FilesPath = cur_path)
cytomapperShiny(object = pancreasSCE, mask = cur_Masks,
cell_id = "CellNb", img_id = "ImageNb")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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