Bioconductor/SplicingGraphs: Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.
Getting started
Browse package contents
Package details |
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| Author | D. Bindreither, M. Carlson, M. Morgan, H. Pagès |
| Bioconductor views | AlternativeSplicing Annotation DataRepresentation GeneExpression Genetics ImmunoOncology RNASeq Sequencing Transcription Visualization |
| Maintainer | H. Pagès <hpages.on.github@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.47.0 |
| URL | https://bioconductor.org/packages/SplicingGraphs |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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