Bioconductor/ShortRead: FASTQ input and manipulation
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DataImport QualityControl Sequencing |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.65.0 |
| URL | https://bioconductor.org/packages/ShortRead https://github.com/Bioconductor/ShortRead https://support.bioconductor.org/tag/ShortRead |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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