Global functions | |
---|---|
!,CompressedList-method | Man page |
%outside% | Man page |
%over% | Man page |
%within% | Man page |
.IPosRanges_as_integer_pairs | Source code |
.IPosRanges_summary | Source code |
.IPos_summary | Source code |
.IRanges.reverse | Source code |
.IntegerRanges_promoters | Source code |
.NCList_xp | Source code |
.RangesList_promoters | Source code |
.append.names.or.desc | Source code |
.as.data.frame.IPos | Source code |
.as.data.frame.IPosRanges | Source code |
.as.list.CompressedNormalIRangesList | Source code |
.as.list.SortedByQueryHits | Source code |
.asNormalIRanges | Source code |
.as_factor | Source code |
.check_IntegerRanges_for_coercion_to_IPos | Source code |
.check_arg_names | Source code |
.check_start_or_end_or_width | Source code |
.check_that_Views_objects_are_concatenable | Source code |
.concatenate_CompressedList_objects | Source code |
.concatenate_StitchedIPos_objects | Source code |
.concatenate_Views_objects | Source code |
.coverage_IRanges | Source code |
.default_countOverlaps | Source code |
.do_CompressedList_binary_op | Source code |
.dotargsAsList | Source code |
.dumb_splitAsList | Source code |
.duplicated.CompressedAtomicList | Source code |
.duplicated.CompressedList | Source code |
.duplicated.Dups | Source code |
.extractListFragments_by_Partitioning | Source code |
.extractPartitioningFragments_by_Partitioning | Source code |
.extract_groups_from_RangesList | Source code |
.fold_and_truncate_coverage | Source code |
.from_Hits_to_CompressedIntegerList | Source code |
.from_IPosRanges_to_CompressedIntegerList | Source code |
.from_IPosRanges_to_naked_character_matrix_for_display | Source code |
.from_IPos_to_naked_character_matrix_for_display | Source code |
.from_IntegerRangesList_to_SimpleNormalIRangesList | Source code |
.from_IntegerRanges_to_CompressedIPosList | Source code |
.from_IntegerRanges_to_CompressedIRangesList | Source code |
.from_IntegerRanges_to_StitchedIPos | Source code |
.from_IntegerRanges_to_UnstitchedIPos | Source code |
.from_List_to_CompressedIRangesList | Source code |
.from_List_to_SimpleIRangesList | Source code |
.from_SortedByQueryHits_to_CompressedIntegerList | Source code |
.from_SortedByQueryHits_to_PartitioningByEnd | Source code |
.from_StitchedIPos_to_UnstitchedIPos | Source code |
.from_UnstitchedIPos_to_StitchedIPos | Source code |
.from_character_to_IRanges | Source code |
.from_factor_to_IRanges | Source code |
.from_integer_to_IRanges | Source code |
.from_list_to_CompressedIRangesList | Source code |
.from_list_to_SimpleIRangesList | Source code |
.from_logical_to_NormalIRanges | Source code |
.gaps_CompressedIRangesList | Source code |
.gaps_RangesList | Source code |
.guessGapFileCOL2CLASS | Source code |
.interaction2 | Source code |
.isNormal_IRanges | Source code |
.is_numeric_or_NAs | Source code |
.make_PartitioningByEnd_from_aranges | Source code |
.make_StitchedIPos_from_pos | Source code |
.make_UnstitchedIPos_from_pos_runs | Source code |
.max_CompressedNormalIRangesList | Source code |
.merge_IntegerRangesList | Source code |
.min_CompressedNormalIRangesList | Source code |
.nclist | Source code |
.nclists | Source code |
.newEmptyMask | Source code |
.newH2LGrouping | Source code |
.new_IRanges | Source code |
.new_IRanges_from_end_width | Source code |
.new_IRanges_from_start_end | Source code |
.new_IRanges_from_start_width | Source code |
.new_empty_IRanges | Source code |
.normargSEW | Source code |
.normarg_circle.length1 | Source code |
.normarg_circle.length2 | Source code |
.normarg_f | Source code |
.normarg_n | Source code |
.normarg_nchunk_or_chunksize | Source code |
.normarg_pos | Source code |
.normarg_shift | Source code |
.normarg_shift_or_weight_list | Source code |
.normarg_stitch | Source code |
.normarg_totalsize | Source code |
.numeric2end | Source code |
.numeric2width | Source code |
.onUnload | Source code |
.order_IPosRanges | Source code |
.prepare_Partitioning_names | Source code |
.range_CompressedIRangesList | Source code |
.read.agpORgapFile | Source code |
.read.agpORgapMask | Source code |
.read.liftFile | Source code |
.read.rmFile | Source code |
.read.trfFile | Source code |
.reconcile_mcols | Source code |
.reduce_CompressedIRangesList | Source code |
.restrict_IntegerRanges | Source code |
.setAtomicListMethod | Source code |
.setListMethod | Source code |
.set_IRanges_end | Source code |
.set_IRanges_start | Source code |
.set_IRanges_width | Source code |
.set_Views_ranges | Source code |
.shift_ranges_in_groups_to_first_circle | Source code |
.shift_ranges_to_first_circle | Source code |
.showAtomicList | Source code |
.showDistinctSeqnamesAndStop | Source code |
.solve_start_end_width | Source code |
.splitAsList_by_Rle | Source code |
.splitAsList_by_factor | Source code |
.splitAsList_by_integer | Source code |
.splitAsList_by_integer_Rle | Source code |
.split_and_remap_hits | Source code |
.start_as_unnamed_integer | Source code |
.subset_by_integer | Source code |
.summaryRleViewsList | Source code |
.tapplyDefault | Source code |
.test | Source code |
.to_factor | Source code |
.unique.CompressedList | Source code |
.unique.RleList | Source code |
.unlist_width | Source code |
.unsafe_new_StitchedIPos | Source code |
.unsafe_new_UnstitchedIPos | Source code |
.updateObject_IPos | Source code |
.valid.CompressedList | Source code |
.valid.CompressedList.partitioning | Source code |
.valid.CompressedList.unlistData | Source code |
.valid.H2LGrouping | Source code |
.valid.MaskCollection | Source code |
.valid.MaskCollection.active | Source code |
.valid.MaskCollection.desc | Source code |
.valid.MaskCollection.names | Source code |
.valid.MaskCollection.nir_list | Source code |
.valid.MaskCollection.width | Source code |
.valid.NormalIRanges | Source code |
.valid.NormalIRangesList | Source code |
.valid.PartitioningByEnd | Source code |
.valid.PartitioningByWidth | Source code |
.valid.PartitioningMap | Source code |
.valid.SimpleSplitDataFrameList | Source code |
.validate_IPos | Source code |
.width_as_unnamed_integer | Source code |
AtomicList | Man page |
AtomicList-class | Man page |
AtomicList-utils | Man page |
AtomicListConstructor | Source code |
CharacterList | Man page |
CharacterList-class | Man page |
CoercerToList | Source code |
Complex,AtomicList-method | Man page |
Complex,CompressedAtomicList-method | Man page |
ComplexList | Man page |
ComplexList-class | Man page |
CompressedAtomicList | Man page |
CompressedAtomicList-class | Man page |
CompressedCharacterList | Man page |
CompressedCharacterList-class | Man page |
CompressedComplexList | Man page |
CompressedComplexList-class | Man page |
CompressedDFrameList | Man page |
CompressedDFrameList-class | Man page |
CompressedDataFrameList | Man page |
CompressedDataFrameList-class | Man page |
CompressedFactorList | Man page |
CompressedFactorList-class | Man page |
CompressedGrouping-class | Man page |
CompressedHitsList | Man page Source code |
CompressedHitsList-class | Man page |
CompressedIRangesList | Man page |
CompressedIRangesList-class | Man page |
CompressedIntegerList | Man page |
CompressedIntegerList-class | Man page |
CompressedList | Man page |
CompressedList-class | Man page |
CompressedLogicalList | Man page |
CompressedLogicalList-class | Man page |
CompressedManyToManyGrouping-class | Man page |
CompressedManyToOneGrouping-class | Man page |
CompressedNormalIRangesList | Man page |
CompressedNormalIRangesList-class | Man page |
CompressedNumericList | Man page |
CompressedNumericList-class | Man page |
CompressedRawList | Man page |
CompressedRawList-class | Man page |
CompressedRleList | Man page |
CompressedRleList-class | Man page |
CompressedSplitDFrameList | Man page |
CompressedSplitDFrameList-class | Man page |
CompressedSplitDataFrameList | Man page |
CompressedSplitDataFrameList-class | Man page |
DFrameList | Man page |
DFrameList-class | Man page |
DataFrameList | Man page Source code |
DataFrameList-class | Man page |
Dups | Man page Source code |
Dups-class | Man page |
FactorList | Man page |
FactorList-class | Man page |
Grouping | Man page |
Grouping-class | Man page |
GroupingIRanges | Man page |
GroupingIRanges-class | Man page |
GroupingRanges | Man page |
GroupingRanges-class | Man page |
H2LGrouping | Man page Source code |
H2LGrouping-class | Man page |
Hits-examples | Man page |
INCOMPATIBLE_ARANGES_MSG | Man page |
IPos | Man page Source code |
IPos-class | Man page |
IPosRanges | Man page |
IPosRanges-class | Man page |
IPosRanges-comparison | Man page |
IQR,AtomicList-method | Man page |
IRanges | Man page Source code |
IRanges-class | Man page |
IRanges-constructor | Man page |
IRanges-utils | Man page |
IRangesList | Man page Source code |
IRangesList-class | Man page |
IntegerList | Man page |
IntegerList-class | Man page |
IntegerRanges | Man page |
IntegerRanges-class | Man page |
IntegerRangesList | Man page |
IntegerRangesList-class | Man page |
IntegerRanges_OR_missing | Man page |
IntegerRanges_OR_missing-class | Man page |
LogicalList | Man page |
LogicalList-class | Man page |
ManyToManyGrouping | Man page Source code |
ManyToManyGrouping-class | Man page |
ManyToOneGrouping | Man page Source code |
ManyToOneGrouping-class | Man page |
Mask | Man page Source code |
MaskCollection | Man page |
MaskCollection-class | Man page |
MaskCollection.show_frame | Man page Source code |
Math,AtomicList-method | Man page |
Math,CompressedAtomicList-method | Man page |
Math2,AtomicList-method | Man page |
Math2,CompressedAtomicList-method | Man page |
NCList | Man page Source code |
NCList-class | Man page |
NCLists | Man page Source code |
NCLists-class | Man page |
NROW,DataFrameList-method | Man page |
NormalIRanges | Man page |
NormalIRanges-class | Man page |
NormalIRangesList | Man page |
NormalIRangesList-class | Man page |
NumericList | Man page |
NumericList-class | Man page |
Ops,AtomicList,AtomicList-method | Man page |
Ops,AtomicList,atomic-method | Man page |
Ops,AtomicList,missing-method | Man page |
Ops,CompressedAtomicList,CompressedAtomicList-method | Man page |
Ops,CompressedAtomicList,SimpleAtomicList-method | Man page |
Ops,CompressedAtomicList,atomic-method | Man page |
Ops,CompressedRangesList,numeric-method | Man page |
Ops,Ranges,numeric-method | Man page |
Ops,RangesList,numeric-method | Man page |
Ops,SimpleAtomicList,CompressedAtomicList-method | Man page |
Ops,atomic,AtomicList-method | Man page |
Ops,atomic,CompressedAtomicList-method | Man page |
Partitioning | Man page |
Partitioning-class | Man page |
PartitioningByEnd | Man page Source code |
PartitioningByEnd-class | Man page |
PartitioningByWidth | Man page Source code |
PartitioningByWidth-class | Man page |
PartitioningMap | Man page Source code |
PartitioningMap-class | Man page |
ROWNAMES,DataFrameList-method | Man page |
ROWNAMES<-,DataFrameList-method | Man page |
RangedSelection | Man page Source code |
RangedSelection-class | Man page |
RawList | Man page |
RawList-class | Man page |
RleList | Man page |
RleList,AtomicList,RleList-method | Man page |
RleList-class | Man page |
RleViews | Man page |
RleViews-class | Man page |
RleViews.show_vframe | Source code |
RleViews.show_vframe_header | Source code |
RleViews.show_vframe_line | Source code |
RleViewsList | Man page Source code |
RleViewsList-class | Man page |
SimpleAtomicList | Man page |
SimpleAtomicList-class | Man page |
SimpleCharacterList | Man page |
SimpleCharacterList-class | Man page |
SimpleComplexList | Man page |
SimpleComplexList-class | Man page |
SimpleDFrameList | Man page |
SimpleDFrameList-class | Man page |
SimpleDataFrameList | Man page |
SimpleDataFrameList-class | Man page |
SimpleFactorList | Man page |
SimpleFactorList-class | Man page |
SimpleGrouping-class | Man page |
SimpleIRangesList | Man page |
SimpleIRangesList-class | Man page |
SimpleIntegerList | Man page |
SimpleIntegerList-class | Man page |
SimpleIntegerRangesList | Man page |
SimpleIntegerRangesList-class | Man page |
SimpleLogicalList | Man page |
SimpleLogicalList-class | Man page |
SimpleManyToManyGrouping-class | Man page |
SimpleManyToOneGrouping-class | Man page |
SimpleNormalIRangesList | Man page |
SimpleNormalIRangesList-class | Man page |
SimpleNumericList | Man page |
SimpleNumericList-class | Man page |
SimpleRawList | Man page |
SimpleRawList-class | Man page |
SimpleRleList | Man page |
SimpleRleList-class | Man page |
SimpleRleViewsList-class | Man page |
SimpleSplitDFrameList | Man page |
SimpleSplitDFrameList-class | Man page |
SimpleSplitDataFrameList | Man page |
SimpleSplitDataFrameList-class | Man page |
SimpleViewsList | Man page |
SimpleViewsList-class | Man page |
SplitDFrameList | Man page |
SplitDFrameList-class | Man page |
SplitDataFrameList | Man page Source code |
SplitDataFrameList-class | Man page |
StitchedIPos | Man page |
StitchedIPos-class | Man page |
Summary,AtomicList-method | Man page |
Summary,CompressedRleList-method | Man page |
Summary,Views-method | Man page |
UnstitchedIPos | Man page |
UnstitchedIPos-class | Man page |
Views | Man page |
Views,Rle-method | Man page |
Views,RleList-method | Man page |
Views-class | Man page |
ViewsList | Man page |
ViewsList-class | Man page |
[,CompressedSplitDataFrameList-method | Man page |
[,SimpleSplitDataFrameList-method | Man page |
[<-,SplitDataFrameList-method | Man page |
[[,SDFLWrapperForTransform-method | Man page |
[[<-,SDFLWrapperForTransform-method | Man page |
`%outside%` | Source code |
`%over%` | Source code |
`%poutside%` | Source code |
`%pover%` | Source code |
`%pwithin%` | Source code |
`%within%` | Source code |
`.window<-.Vector` | Source code |
`splitAsList<-` | Source code |
`window<-.Vector` | Source code |
`window<-.factor` | Source code |
active | Man page |
active,MaskCollection-method | Man page |
active<- | Man page |
active<-,MaskCollection-method | Man page |
all,CompressedAtomicList-method | Man page |
all,CompressedRleList-method | Man page |
any,CompressedAtomicList-method | Man page |
anyNA,CompressedAtomicList-method | Man page |
append,MaskCollection,MaskCollection-method | Man page |
as.character,IPosRanges-method | Man page |
as.data.frame,IPos-method | Man page |
as.data.frame,IPosRanges-method | Man page |
as.data.frame.IPos | Man page Source code |
as.data.frame.IPosRanges | Man page Source code |
as.env,SDFLWrapperForTransform-method | Man page |
as.factor,IPosRanges-method | Man page |
as.list,CompressedAtomicList-method | Man page |
as.list,CompressedNormalIRangesList-method | Man page |
as.list,Hits-method | Man page |
as.list,SortedByQueryHits-method | Man page |
as.matrix,AtomicList-method | Man page |
as.matrix,CompressedHitsList-method | Man page |
as.matrix,IPosRanges-method | Man page |
as.matrix,Views-method | Man page |
as.matrix,ViewsList-method | Man page |
as.matrix.AtomicList | Source code |
as.vector,AtomicList-method | Man page |
asNormalIRanges | Man page Source code |
as_list_of_IRanges | Source code |
bindROWS,CompressedList-method | Man page |
bindROWS,IPos-method | Man page |
bindROWS,NCList-method | Man page |
bindROWS,Partitioning-method | Man page |
bindROWS,Views-method | Man page |
breakInChunks | Man page Source code |
cbind,DataFrameList-method | Man page |
centeredIRanges | Source code |
chartr,ANY,ANY,CompressedCharacterList-method | Man page |
chartr,ANY,ANY,CompressedRleList-method | Man page |
chartr,ANY,ANY,SimpleCharacterList-method | Man page |
chartr,ANY,ANY,SimpleRleList-method | Man page |
class:AtomicList | Man page |
class:CharacterList | Man page |
class:ComplexList | Man page |
class:CompressedAtomicList | Man page |
class:CompressedCharacterList | Man page |
class:CompressedComplexList | Man page |
class:CompressedDFrameList | Man page |
class:CompressedDataFrameList | Man page |
class:CompressedFactorList | Man page |
class:CompressedGrouping | Man page |
class:CompressedHitsList | Man page |
class:CompressedIRangesList | Man page |
class:CompressedIntegerList | Man page |
class:CompressedList | Man page |
class:CompressedLogicalList | Man page |
class:CompressedManyToManyGrouping | Man page |
class:CompressedManyToOneGrouping | Man page |
class:CompressedNormalIRangesList | Man page |
class:CompressedNumericList | Man page |
class:CompressedRawList | Man page |
class:CompressedRleList | Man page |
class:CompressedSplitDFrameList | Man page |
class:CompressedSplitDataFrameList | Man page |
class:DFrameList | Man page |
class:DataFrameList | Man page |
class:Dups | Man page |
class:FactorList | Man page |
class:Grouping | Man page |
class:GroupingIRanges | Man page |
class:GroupingRanges | Man page |
class:H2LGrouping | Man page |
class:IPos | Man page |
class:IPosRanges | Man page |
class:IRanges | Man page |
class:IRangesList | Man page |
class:IntegerList | Man page |
class:IntegerRanges | Man page |
class:IntegerRangesList | Man page |
class:IntegerRanges_OR_missing | Man page |
class:LogicalList | Man page |
class:ManyToManyGrouping | Man page |
class:ManyToOneGrouping | Man page |
class:MaskCollection | Man page |
class:NCList | Man page |
class:NCLists | Man page |
class:NormalIRanges | Man page |
class:NormalIRangesList | Man page |
class:NumericList | Man page |
class:Partitioning | Man page |
class:PartitioningByEnd | Man page |
class:PartitioningByWidth | Man page |
class:PartitioningMap | Man page |
class:RawList | Man page |
class:RleList | Man page |
class:RleViews | Man page |
class:SimpleAtomicList | Man page |
class:SimpleCharacterList | Man page |
class:SimpleComplexList | Man page |
class:SimpleDFrameList | Man page |
class:SimpleDataFrameList | Man page |
class:SimpleFactorList | Man page |
class:SimpleGrouping | Man page |
class:SimpleIRangesList | Man page |
class:SimpleIntegerList | Man page |
class:SimpleIntegerRangesList | Man page |
class:SimpleLogicalList | Man page |
class:SimpleManyToManyGrouping | Man page |
class:SimpleManyToOneGrouping | Man page |
class:SimpleNormalIRangesList | Man page |
class:SimpleNumericList | Man page |
class:SimpleRawList | Man page |
class:SimpleRleList | Man page |
class:SimpleSplitDFrameList | Man page |
class:SimpleSplitDataFrameList | Man page |
class:SimpleViewsList | Man page |
class:SplitDFrameList | Man page |
class:SplitDataFrameList | Man page |
class:StitchedIPos | Man page |
class:UnstitchedIPos | Man page |
class:Views | Man page |
class:ViewsList | Man page |
classNameForDisplay,CompressedDFrameList-method | Man page |
classNameForDisplay,CompressedList-method | Man page |
classNameForDisplay,SimpleDFrameList-method | Man page |
coerce,ANY,CompressedDataFrameList-method | Man page |
coerce,ANY,CompressedList-method | Man page |
coerce,ANY,CompressedSplitDFrameList-method | Man page |
coerce,ANY,CompressedSplitDataFrameList-method | Man page |
coerce,ANY,DataFrameList-method | Man page |
coerce,ANY,IPos-method | Man page |
coerce,ANY,IntegerRanges-method | Man page |
coerce,ANY,SimpleDataFrameList-method | Man page |
coerce,ANY,SimpleSplitDFrameList-method | Man page |
coerce,ANY,SimpleSplitDataFrameList-method | Man page |
coerce,ANY,SplitDFrameList-method | Man page |
coerce,ANY,SplitDataFrameList-method | Man page |
coerce,ANY,StitchedIPos-method | Man page |
coerce,ANY,UnstitchedIPos-method | Man page |
coerce,ANY,vector-method | Man page |
coerce,AtomicList,CharacterList-method | Man page |
coerce,AtomicList,ComplexList-method | Man page |
coerce,AtomicList,IntegerList-method | Man page |
coerce,AtomicList,LogicalList-method | Man page |
coerce,AtomicList,NumericList-method | Man page |
coerce,AtomicList,RawList-method | Man page |
coerce,AtomicList,RleList-method | Man page |
coerce,AtomicList,RleViews | Man page |
coerce,CompressedAtomicList,list-method | Man page |
coerce,CompressedIRangesList,CompressedNormalIRangesList-method | Man page |
coerce,CompressedRleList,CompressedIRangesList-method | Man page |
coerce,DataFrame,Grouping-method | Man page |
coerce,DataFrame,SplitDFrameList-method | Man page |
coerce,DataFrameList,DFrame-method | Man page |
coerce,FactorList,Grouping-method | Man page |
coerce,Hits,CompressedIntegerList-method | Man page |
coerce,Hits,Grouping | Man page |
coerce,Hits,Grouping-method | Man page |
coerce,Hits,IntegerList-method | Man page |
coerce,Hits,List-method | Man page |
coerce,IRanges,NormalIRanges-method | Man page |
coerce,IntegerRanges,CompressedIRangesList-method | Man page |
coerce,IntegerRanges,IPos-method | Man page |
coerce,IntegerRanges,IRanges-method | Man page |
coerce,IntegerRanges,NCList-method | Man page |
coerce,IntegerRanges,PartitioningByEnd-method | Man page |
coerce,IntegerRanges,PartitioningByWidth-method | Man page |
coerce,IntegerRanges,StitchedIPos-method | Man page |
coerce,IntegerRanges,UnstitchedIPos-method | Man page |
coerce,IntegerRangesList,CompressedNormalIRangesList-method | Man page |
coerce,IntegerRangesList,NCLists-method | Man page |
coerce,IntegerRangesList,NormalIRangesList-method | Man page |
coerce,IntegerRangesList,RangedSelection-method | Man page |
coerce,IntegerRangesList,SimpleIRangesList-method | Man page |
coerce,IntegerRangesList,SimpleNormalIRangesList-method | Man page |
coerce,List,CompressedIRangesList-method | Man page |
coerce,List,CompressedSplitDFrameList-method | Man page |
coerce,List,IRangesList-method | Man page |
coerce,List,SimpleIRangesList-method | Man page |
coerce,List,SimpleSplitDFrameList-method | Man page |
coerce,LogicalList,CompressedNormalIRangesList-method | Man page |
coerce,LogicalList,NormalIRangesList-method | Man page |
coerce,LogicalList,SimpleNormalIRangesList-method | Man page |
coerce,ManyToOneGrouping,factor-method | Man page |
coerce,MaskCollection,NormalIRanges-method | Man page |
coerce,NCLists,CompressedIRangesList-method | Man page |
coerce,NCLists,IRangesList-method | Man page |
coerce,NormalIRangesList,CompressedNormalIRangesList-method | Man page |
coerce,Rle,IRanges-method | Man page |
coerce,Rle,NormalIRanges-method | Man page |
coerce,RleList,CompressedNormalIRangesList-method | Man page |
coerce,RleList,NormalIRangesList-method | Man page |
coerce,RleList,SimpleNormalIRangesList-method | Man page |
coerce,RleViewsList,IRangesList-method | Man page |
coerce,RleViewsList,SimpleIRangesList-method | Man page |
coerce,SimpleIRangesList,SimpleNormalIRangesList-method | Man page |
coerce,SimpleIntegerRangesList,SimpleIRangesList-method | Man page |
coerce,SimpleList,SimpleIRangesList-method | Man page |
coerce,SimpleList,SplitDFrameList-method | Man page |
coerce,SortedByQueryHits,CompressedIntegerList-method | Man page |
coerce,SortedByQueryHits,IRanges-method | Man page |
coerce,SortedByQueryHits,IntegerList-method | Man page |
coerce,SortedByQueryHits,IntegerRanges-method | Man page |
coerce,SortedByQueryHits,List-method | Man page |
coerce,SortedByQueryHits,Partitioning-method | Man page |
coerce,SortedByQueryHits,PartitioningByEnd-method | Man page |
coerce,SplitDataFrameList,DFrame-method | Man page |
coerce,StitchedIPos,UnstitchedIPos-method | Man page |
coerce,UnstitchedIPos,StitchedIPos-method | Man page |
coerce,Vector,Views-method | Man page |
coerce,Views,IRanges-method | Man page |
coerce,Views,IntegerRanges-method | Man page |
coerce,Views,NormalIRanges-method | Man page |
coerce,character,IRanges-method | Man page |
coerce,factor,IRanges-method | Man page |
coerce,grouping,Grouping-method | Man page |
coerce,grouping,ManyToOneGrouping-method | Man page |
coerce,integer,IRanges-method | Man page |
coerce,integer,NormalIRanges-method | Man page |
coerce,list,CompressedIRangesList-method | Man page |
coerce,list,IRangesList-method | Man page |
coerce,list,SimpleIRangesList-method | Man page |
coerce,list,SplitDFrameList-method | Man page Man page |
coerce,logical,IRanges-method | Man page |
coerce,logical,NormalIRanges-method | Man page |
coerce,numeric,IRanges-method | Man page |
coerce,numeric,NormalIRanges-method | Man page |
coerce,vector,AtomicList-method | Man page |
coerce,vector,CompressedCharacterList-method | Man page |
coerce,vector,CompressedComplexList-method | Man page |
coerce,vector,CompressedIntegerList-method | Man page |
coerce,vector,CompressedLogicalList-method | Man page |
coerce,vector,CompressedNumericList-method | Man page |
coerce,vector,CompressedRawList-method | Man page |
coerce,vector,CompressedRleList-method | Man page |
coerce,vector,Grouping-method | Man page |
coerce,vector,ManyToManyGrouping-method | Man page |
coerce,vector,ManyToOneGrouping-method | Man page |
coerce,vector,SimpleCharacterList-method | Man page |
coerce,vector,SimpleComplexList-method | Man page |
coerce,vector,SimpleIntegerList-method | Man page |
coerce,vector,SimpleLogicalList-method | Man page |
coerce,vector,SimpleNumericList-method | Man page |
coerce,vector,SimpleRawList-method | Man page |
coerce,vector,SimpleRleList-method | Man page |
coerceToCompressedList | Source code |
collapse | Man page |
collapse,MaskCollection-method | Man page |
colnames,CompressedSplitDataFrameList-method | Man page |
colnames,DataFrameList-method | Man page |
colnames,RangedSelection-method | Man page |
colnames,SDFLWrapperForTransform-method | Man page |
colnames,SplitDataFrameList-method | Man page |
colnames<-,CompressedSplitDataFrameList-method | Man page |
colnames<-,RangedSelection-method | Man page |
colnames<-,SimpleDataFrameList-method | Man page |
columnMetadata | Man page |
columnMetadata,CompressedSplitDataFrameList-method | Man page |
columnMetadata,SimpleSplitDataFrameList-method | Man page |
columnMetadata<- | Man page |
columnMetadata<-,CompressedSplitDataFrameList-method | Man page |
columnMetadata<-,SimpleSplitDataFrameList-method | Man page |
commonColnames | Man page |
commonColnames,CompressedSplitDataFrameList-method | Man page |
commonColnames,SimpleSplitDataFrameList-method | Man page |
commonColnames<- | Man page |
commonColnames<-,CompressedSplitDataFrameList-method | Man page |
commonColnames<-,SimpleSplitDataFrameList-method | Man page |
cor,AtomicList,AtomicList-method | Man page |
countOverlaps | Man page |
countOverlaps,IntegerRanges,IntegerRanges-method | Man page |
countOverlaps,IntegerRangesList,IntegerRangesList-method | Man page |
countOverlaps,Vector,Vector-method | Man page |
countOverlaps,Vector,missing-method | Man page |
countOverlaps,integer,Vector-method | Man page |
countOverlaps_IntegerRanges | Source code |
cov,AtomicList,AtomicList-method | Man page |
coverage | Man page |
coverage,IntegerRanges-method | Man page |
coverage,IntegerRangesList-method | Man page |
coverage,StitchedIPos-method | Man page |
coverage,Views-method | Man page |
coverage-methods | Man page |
coverage_CompressedIRangesList | Source code |
cummax,CompressedAtomicList-method | Man page |
cummin,CompressedAtomicList-method | Man page |
cumprod,CompressedAtomicList-method | Man page |
cumsum,CompressedAtomicList-method | Man page |
cvg_IntegerRanges | Source code |
cvg_IntegerRangesList | Source code |
default_overlapsAny | Source code |
default_splitAsList | Source code |
default_subsetByOverlaps | Source code |
desc | Man page |
desc,MaskCollection-method | Man page |
desc<- | Man page |
desc<-,MaskCollection-method | Man page |
diceRangesByList | Source code |
diff,CompressedAtomicList-method | Man page |
diff.AtomicList | Man page Source code |
dim,DataFrameList-method | Man page |
dimnames,DataFrameList-method | Man page |
dimnames<-,DataFrameList-method | Man page |
dims,DataFrameList-method | Man page |
disjoin | Man page |
disjoin,CompressedIRangesList-method | Man page |
disjoin,IntegerRanges-method | Man page |
disjoin,IntegerRangesList-method | Man page |
disjoin,NormalIRanges-method | Man page |
disjointBins | Man page |
disjointBins,IntegerRanges-method | Man page |
disjointBins,IntegerRangesList-method | Man page |
disjointBins,NormalIRanges-method | Man page |
distance | Man page |
distance,IntegerRanges,IntegerRanges-method | Man page |
distance,Pairs,missing-method | Man page |
distanceToNearest | Man page |
distanceToNearest,IntegerRanges,IntegerRanges_OR_missing-method | Man page |
drop,AtomicList-method | Man page |
duplicated,CompressedAtomicList-method | Man page |
duplicated,CompressedList-method | Man page |
duplicated,Dups-method | Man page |
effective_restriction_window_for_IntegerRanges | Source code |
effective_restriction_windows_for_IntegerRangesList | Source code |
elementNROWS,CompressedList-method | Man page |
elementNROWS,NCLists-method | Man page |
elementNROWS,Ranges-method | Man page |
emptyOpsReturnValue | Source code |
end,CompressedRangesList-method | Man page |
end,NCList-method | Man page |
end,NCLists-method | Man page |
end,PartitioningByEnd-method | Man page |
end,PartitioningByWidth-method | Man page |
end,Pos-method | Man page |
end,Ranges-method | Man page |
end,RangesList-method | Man page |
end,SimpleViewsList-method | Man page |
end<- | Man page |
end<-,IRanges-method | Man page |
end<-,IntegerRangesList-method | Man page |
end<-,Views-method | Man page |
endsWith,CharacterList,ANY-method | Man page |
endsWith,RleList,ANY-method | Man page |
equisplit | Man page Source code |
eval | Man page |
eval,expression,Vector-method | Man page |
eval,language,Vector-method | Man page |
extractList | Man page |
extractList,ANY,ANY-method | Man page |
extractList,ANY-method | Man page |
extractListFragments | Man page Source code |
extractROWS,IPos-method | Man page |
extractROWS,NCList,ANY-method | Man page |
extractROWS,Partitioning-method | Man page |
extract_pos_runs_by_ranges | Source code |
findOverlapPairs | Man page Source code |
findOverlaps | Man page |
findOverlaps,ANY,Pairs-method | Man page |
findOverlaps,IntegerRanges,IntegerRanges-method | Man page |
findOverlaps,IntegerRangesList,IntegerRangesList-method | Man page |
findOverlaps,Pairs,ANY-method | Man page |
findOverlaps,Pairs,Pairs-method | Man page |
findOverlaps,Pairs,missing-method | Man page |
findOverlaps,Vector,missing-method | Man page |
findOverlaps,integer,IntegerRanges-method | Man page |
findOverlaps-methods | Man page |
findOverlaps_IntegerRanges | Source code |
findOverlaps_IntegerRanges_Partitioning | Source code |
findOverlaps_NCList | Source code |
findOverlaps_NCLists | Source code |
findRange | Man page |
findRange,Rle-method | Man page |
find_overlaps_in_groups_NCList | Source code |
flank | Man page |
flank,Ranges-method | Man page |
flank,RangesList-method | Man page |
follow | Man page |
follow,IntegerRanges,IntegerRanges_OR_missing-method | Man page |
from,CompressedHitsList-method | Man page |
from_Vector_to_CompressedList | Source code |
gaps | Man page |
gaps,CompressedIRangesList-method | Man page |
gaps,IntegerRanges-method | Man page |
gaps,IntegerRangesList-method | Man page |
gaps,MaskCollection-method | Man page |
gaps,Views-method | Man page |
getListElement,IPosRanges-method | Man page |
get_IPos_version | Source code |
global2local_revmap | Source code |
grouplengths | Man page |
grouplengths,CompressedGrouping-method | Man page |
grouplengths,Grouping-method | Man page |
grouplengths,GroupingRanges-method | Man page |
grouplengths,H2LGrouping-method | Man page |
grouprank | Man page |
grouprank,H2LGrouping-method | Man page |
gsub,ANY,ANY,CompressedCharacterList-method | Man page |
gsub,ANY,ANY,CompressedRleList-method | Man page |
gsub,ANY,ANY,SimpleCharacterList-method | Man page |
gsub,ANY,ANY,SimpleRleList-method | Man page |
heads | Source code |
high2low | Man page |
high2low,ANY-method | Man page |
high2low,H2LGrouping-method | Man page |
ifelse2 | Man page |
ifelse2,ANY,ANY,List-method | Man page |
ifelse2,ANY,List,ANY-method | Man page |
ifelse2,CompressedLogicalList,ANY,ANY-method | Man page |
ifelse2,CompressedLogicalList,ANY,List-method | Man page |
ifelse2,CompressedLogicalList,List,ANY-method | Man page Man page |
ifelse2,CompressedLogicalList,List,List-method | Man page |
ifelse2,List,ANY,ANY-method | Man page |
ifelse2,SimpleLogicalList,ANY,ANY-method | Man page |
ifelse2,SimpleLogicalList,ANY,List-method | Man page |
ifelse2,SimpleLogicalList,List,ANY-method | Man page Man page |
ifelse2,SimpleLogicalList,List,List-method | Man page |
ifelseReturnValue | Source code |
inter-range-methods | Man page |
intersect | Man page |
intersect,CompressedAtomicList,CompressedAtomicList-method | Man page |
intersect,CompressedIRangesList,CompressedIRangesList-method | Man page |
intersect,IntegerRanges,IntegerRanges-method | Man page |
intersect,IntegerRangesList,IntegerRangesList-method | Man page |
intersect,Pairs,missing-method | Man page |
intra-range-methods | Man page |
is.na,CompressedList-method | Man page |
is.unsorted,IPosRanges-method | Man page |
isDisjoint | Man page |
isDisjoint,IntegerRanges-method | Man page |
isDisjoint,IntegerRangesList-method | Man page |
isDisjoint,NormalIRanges-method | Man page |
isDisjoint,StitchedIPos-method | Man page |
isEmpty,NormalIRanges-method | Man page |
isEmpty,Ranges-method | Man page |
isNormal | Man page |
isNormal,CompressedIRangesList-method | Man page |
isNormal,IRanges-method | Man page |
isNormal,IntegerRangesList-method | Man page |
isNormal,NormalIRanges-method | Man page |
isNormal,Ranges-method | Man page |
isNormal,SimpleIRangesList-method | Man page |
lapply,CompressedAtomicList-method | Man page |
lapply,CompressedList-method | Man page |
lapply_CompressedList | Source code |
length,CompressedList-method | Man page |
length,H2LGrouping-method | Man page |
length,IPos-method | Man page |
length,MaskCollection-method | Man page |
length,NCList-method | Man page |
length,NCLists-method | Man page |
length,PartitioningByEnd-method | Man page |
length,PartitioningByWidth-method | Man page |
length,Ranges-method | Man page |
length,UnstitchedIPos-method | Man page |
length<-,H2LGrouping-method | Man page |
levelCols | Source code |
local2global_revmap | Source code |
low2high | Man page |
low2high,H2LGrouping-method | Man page |
mad,AtomicList-method | Man page |
makeGroupNames | Source code |
make_IRanges_from_windows_args | Source code |
mapOrder | Man page |
mapOrder,PartitioningMap-method | Man page |
maskedratio | Man page |
maskedratio,MaskCollection-method | Man page |
maskedwidth | Man page |
maskedwidth,MaskCollection-method | Man page |
match,CompressedList,vector-method | Man page |
match,IPosRanges,IPosRanges-method | Man page |
max,CompressedNormalIRangesList-method | Man page |
max,MaskCollection-method | Man page |
max,NormalIRanges-method | Man page |
max,SimpleNormalIRangesList-method | Man page |
max,Views-method | Man page |
mean,AtomicList-method | Man page |
mean,CompressedIntegerList-method | Man page |
mean,CompressedLogicalList-method | Man page |
mean,CompressedNumericList-method | Man page |
mean,CompressedRleList-method | Man page |
mean,Views-method | Man page |
median,AtomicList-method | Man page |
median,CompressedAtomicList-method | Man page |
members | Man page |
members,H2LGrouping-method | Man page |
members,ManyToOneGrouping-method | Man page |
merge,IntegerRangesList,IntegerRangesList-method | Man page |
merge,IntegerRangesList,missing-method | Man page |
merge,missing,IntegerRangesList-method | Man page |
mergeByOverlaps | Man page Source code |
mid | Man page |
mid,Ranges-method | Man page |
min,CompressedNormalIRangesList-method | Man page |
min,MaskCollection-method | Man page |
min,NormalIRanges-method | Man page |
min,SimpleNormalIRangesList-method | Man page |
min,Views-method | Man page |
multisplit | Man page Source code |
nLnode,CompressedHitsList-method | Man page |
nRnode,CompressedHitsList-method | Man page |
names,CompressedList-method | Man page |
names,IPos-method | Man page |
names,IRanges-method | Man page |
names,MaskCollection-method | Man page |
names,NCList-method | Man page |
names,NCLists-method | Man page |
names,Partitioning-method | Man page |
names,Views-method | Man page |
names<-,CompressedList-method | Man page |
names<-,IPos-method | Man page |
names<-,IRanges-method | Man page |
names<-,MaskCollection-method | Man page |
names<-,Partitioning-method | Man page |
names<-,Views-method | Man page |
narrow | Man page |
narrow,ANY-method | Man page |
narrow,MaskCollection-method | Man page |
nchar,CompressedCharacterList-method | Man page |
nchar,CompressedRleList-method | Man page |
nchar,SimpleCharacterList-method | Man page |
nchar,SimpleRleList-method | Man page |
nchar_CompressedList | Source code |
ncol,CompressedSplitDataFrameList-method | Man page |
ncol,DataFrameList-method | Man page |
ncol,SimpleSplitDataFrameList-method | Man page |
ncols,CompressedSplitDataFrameList-method | Man page |
ncols,DataFrameList-method | Man page |
ncols,SimpleSplitDataFrameList-method | Man page |
nearest | Man page |
nearest,IntegerRanges,IntegerRanges_OR_missing-method | Man page |
nearest-methods | Man page |
newCompressedList0 | Source code |
newNormalIRangesFromIRanges | Source code |
new_CompressedList_from_list | Source code |
new_StitchedIPos | Source code |
new_UnstitchedIPos | Source code |
new_Views | Source code |
nir_list | Man page |
nir_list,MaskCollection-method | Man page |
nobj | Man page |
nobj,BaseManyToManyGrouping-method | Man page |
nobj,CompressedManyToOneGrouping-method | Man page |
nobj,H2LGrouping-method | Man page |
nobj,ManyToManyGrouping-method | Man page |
nobj,ManyToOneGrouping-method | Man page |
nobj,PartitioningByEnd-method | Man page |
nrow,DataFrameList-method | Man page |
nrows,DataFrameList-method | Man page |
order,CompressedAtomicList-method | Man page |
order,IPosRanges-method | Man page |
order,List-method | Man page |
overlapsAny | Man page |
overlapsAny,IntegerRangesList,IntegerRangesList-method | Man page |
overlapsAny,Vector,Vector-method | Man page |
overlapsAny,Vector,missing-method | Man page |
overlapsAny,integer,Vector-method | Man page |
overlapsRanges | Man page |
overlapsRanges,IntegerRanges,IntegerRanges-method | Man page |
overlapsRanges,IntegerRangesList,IntegerRangesList-method | Man page |
parallel_slot_names,IPos-method | Man page |
parallel_slot_names,IRanges-method | Man page |
parallel_slot_names,NCLists-method | Man page |
parallel_slot_names,Partitioning-method | Man page |
parallel_slot_names,PartitioningByEnd-method | Man page |
parallel_slot_names,PartitioningByWidth-method | Man page |
parallel_slot_names,UnstitchedIPos-method | Man page |
parallel_slot_names,Views-method | Man page |
paste,CompressedAtomicList-method | Man page |
pcompare | Man page |
pcompare,IPosRanges,IPosRanges-method | Man page |
pgap | Man page |
pgap,IntegerRanges,IntegerRanges-method | Man page |
pintersect | Man page |
pintersect,IntegerRanges,IntegerRanges-method | Man page |
pintersect,Pairs,missing-method | Man page |
pmax,IntegerList-method | Man page |
pmax,NumericList-method | Man page |
pmax,RleList-method | Man page |
pmax.int,IntegerList-method | Man page |
pmax.int,NumericList-method | Man page |
pmax.int,RleList-method | Man page |
pmin,IntegerList-method | Man page |
pmin,NumericList-method | Man page |
pmin,RleList-method | Man page |
pmin.int,IntegerList-method | Man page |
pmin.int,NumericList-method | Man page |
pmin.int,RleList-method | Man page |
pos | Man page |
pos,CompressedPosList-method | Man page |
pos,IPos-method | Man page |
pos,PosList-method | Man page |
pos,UnstitchedIPos-method | Man page |
poverlaps | Man page |
poverlaps,IntegerRanges,IntegerRanges-method | Man page |
poverlaps,IntegerRanges,integer-method | Man page |
poverlaps,integer,IntegerRanges-method | Man page |
precede | Man page |
precede,IntegerRanges,IntegerRanges_OR_missing-method | Man page |
print_NCList | Source code |
promoters | Man page |
promoters,IntegerRanges-method | Man page |
promoters,RangesList-method | Man page |
psetdiff | Man page |
psetdiff,IntegerRanges,IntegerRanges-method | Man page |
psetdiff,Pairs,missing-method | Man page |
punion | Man page |
punion,IntegerRanges,IntegerRanges-method | Man page |
punion,Pairs,missing-method | Man page |
quantile,AtomicList-method | Man page |
range | Man page |
range,CompressedIRangesList-method | Man page |
range,CompressedIntegerList-method | Man page |
range,CompressedLogicalList-method | Man page |
range,CompressedNumericList-method | Man page |
range,IntegerRanges-method | Man page |
range,IntegerRangesList-method | Man page |
range,StitchedIPos-method | Man page |
range-squeezers | Man page |
rangeComparisonCodeToLetter | Man page Source code |
ranges | Man page |
ranges,CompressedRleList-method | Man page |
ranges,IntegerRanges-method | Man page |
ranges,NCLists-method | Man page |
ranges,RangedSelection-method | Man page |
ranges,Rle-method | Man page |
ranges,RleList-method | Man page |
ranges,SimpleViewsList-method | Man page |
ranges,Views-method | Man page |
ranges<- | Man page |
ranges<-,RangedSelection-method | Man page |
ranges<-,Views-method | Man page |
rank,CompressedAtomicList-method | Man page |
rank,List-method | Man page |
rbind,DataFrameList-method | Man page |
read.Mask | Man page |
read.agpMask | Man page Source code |
read.gapMask | Man page Source code |
read.liftMask | Man page Source code |
read.rmMask | Man page Source code |
read.trfMask | Man page Source code |
recycleList | Source code |
recycleListElements | Source code |
reduce | Man page |
reduce,CompressedIRangesList-method | Man page |
reduce,IntegerRanges-method | Man page |
reduce,IntegerRangesList-method | Man page |
reduce,Views-method | Man page |
reflect | Man page |
reflect,IntegerRanges-method | Man page |
regroup | Man page Source code |
regroupBySupergroup | Source code |
relist | Man page |
relist,ANY,List-method | Man page |
relist,ANY,PartitioningByEnd-method | Man page |
relist,Vector,list-method | Man page |
repLengthOneElements | Source code |
replace_with_mcol_if_single_string | Source code |
resize | Man page |
resize,Ranges-method | Man page |
resize,RangesList-method | Man page |
resplit | Source code |
restrict | Man page |
restrict,IntegerRanges-method | Man page |
restrict,RangesList-method | Man page |
restrict,Views-method | Man page |
revElements,CompressedList-method | Man page |
reverse | Man page |
reverse,IRanges-method | Man page |
reverse,MaskCollection-method | Man page |
reverse,NormalIRanges-method | Man page |
reverse,Views-method | Man page |
reverse,character-method | Man page |
rglist | Man page |
rglist,Pairs-method | Man page |
rownames,DataFrameList-method | Man page |
rownames<-,CompressedSplitDataFrameList-method | Man page |
rownames<-,SimpleDataFrameList-method | Man page |
rowsumCompressedList | Source code |
runLength,CompressedRleList-method | Man page |
runLength,RleList-method | Man page |
runValue,CompressedRleList-method | Man page |
runValue,RleList-method | Man page |
runValue<-,CompressedRleList-method | Man page |
runValue<-,SimpleRleList-method | Man page |
runmean,RleList-method | Man page |
runmed,CompressedIntegerList-method | Man page |
runmed,NumericList-method | Man page |
runmed,RleList-method | Man page |
runmed,SimpleIntegerList-method | Man page |
runq,RleList-method | Man page |
runsum,RleList-method | Man page |
runwtsum,RleList-method | Man page |
sd,AtomicList-method | Man page |
selectNearest | Man page Source code |
selfmatch,CompressedAtomicList-method | Man page |
selfmatch,IPosRanges-method | Man page |
setCompressedListSummaryMethod | Source code |
setCompressedListWhichSummaryMethod | Source code |
setCompressedNumericalListMethod | Source code |
setListCoercions | Source code |
set_IRanges_names | Source code |
setdiff | Man page |
setdiff,CompressedIRangesList,CompressedIRangesList-method | Man page |
setdiff,IntegerRanges,IntegerRanges-method | Man page |
setdiff,IntegerRangesList,IntegerRangesList-method | Man page |
setdiff,Pairs,missing-method | Man page |
setops-methods | Man page |
shift | Man page |
shift,IPos-method | Man page |
shift,Ranges-method | Man page |
shift,RangesList-method | Man page |
show,AtomicList-method | Man page |
show,Dups-method | Man page |
show,Grouping-method | Man page |
show,IPos-method | Man page |
show,IPosRanges-method | Man page |
show,IntegerRangesList-method | Man page |
show,MaskCollection-method | Man page |
show,PartitioningMap-method | Man page |
show,RleList-method | Man page |
show,RleViews-method | Man page |
show,SplitDataFrameList-method | Man page |
show_IPos | Source code |
show_IPosRanges | Source code |
show_IntegerRangesList | Source code |
slice | Man page |
slice,ANY-method | Man page |
slice,Rle-method | Man page |
slice,RleList-method | Man page |
slice-methods | Man page |
slidingIRanges | Source code |
slidingViews | Source code |
slidingWindows | Man page |
slidingWindows,IPosRanges-method | Man page |
smoothEnds,CompressedIntegerList-method | Man page |
smoothEnds,NumericList-method | Man page |
smoothEnds,RleList-method | Man page |
smoothEnds,SimpleIntegerList-method | Man page |
solveUserSEW | Man page Source code |
solveUserSEWForSingleSeq | Source code |
sort,List-method | Man page |
space | Man page |
space,CompressedHitsList-method | Man page |
space,IntegerRangesList-method | Man page |
split<-,Vector-method | Man page |
splitRanges | Man page |
splitRanges,Rle-method | Man page |
splitRanges,vector_OR_factor-method | Man page |
stack,DataFrameList-method | Man page |
start,CompressedRangesList-method | Man page |
start,IRanges-method | Man page |
start,NCList-method | Man page |
start,NCLists-method | Man page |
start,PartitioningByEnd-method | Man page |
start,PartitioningByWidth-method | Man page |
start,Pos-method | Man page |
start,Ranges-method | Man page |
start,RangesList-method | Man page |
start,SimpleViewsList-method | Man page |
start,Views-method | Man page |
start<- | Man page |
start<-,IRanges-method | Man page |
start<-,IntegerRangesList-method | Man page |
start<-,Views-method | Man page |
startsWith,CharacterList,ANY-method | Man page |
startsWith,RleList,ANY-method | Man page |
stitch_IntegerRanges | Source code |
sub,ANY,ANY,CompressedCharacterList-method | Man page |
sub,ANY,ANY,CompressedRleList-method | Man page |
sub,ANY,ANY,SimpleCharacterList-method | Man page |
sub,ANY,ANY,SimpleRleList-method | Man page |
subgrouping | Source code |
subject | Man page |
subject,SimpleRleViewsList-method | Man page |
subject,Views-method | Man page |
subsetByOverlaps | Man page |
subsetByOverlaps,Vector,Vector-method | Man page |
subviews | Man page |
subviews,Views-method | Man page |
successiveIRanges | Man page Source code |
successiveViews | Man page Source code |
sum,CompressedIntegerList-method | Man page |
sum,CompressedLogicalList-method | Man page |
sum,CompressedNumericList-method | Man page |
sum,Views-method | Man page |
summary,CompressedIRangesList-method | Man page |
summary,IPos-method | Man page |
summary,IPosRanges-method | Man page |
summary.IPos | Man page Source code |
summary.IPosRanges | Man page Source code |
table,AtomicList-method | Man page |
table,SimpleAtomicList-method | Man page |
tails | Source code |
tapply,ANY,Vector-method | Man page |
tapply,Vector,ANY-method | Man page |
tapply,Vector,Vector-method | Man page |
terminators | Man page |
terminators,IntegerRanges-method | Man page |
terminators,RangesList-method | Man page |
threebands | Man page |
threebands,IRanges-method | Man page |
tile | Man page |
tile,IPosRanges-method | Man page |
to,CompressedHitsList-method | Man page |
toglobal | Source code |
togroup | Man page |
togroup,ANY-method | Man page |
togroup,H2LGrouping-method | Man page |
togroup,ManyToOneGrouping-method | Man page |
togroup,Partitioning-method | Man page |
togrouplength | Man page |
togrouplength,ManyToOneGrouping-method | Man page |
togrouprank | Man page |
togrouprank,H2LGrouping-method | Man page |
tolower,CompressedCharacterList-method | Man page |
tolower,CompressedRleList-method | Man page |
tolower,SimpleCharacterList-method | Man page |
tolower,SimpleRleList-method | Man page |
toupper,CompressedCharacterList-method | Man page |
toupper,CompressedRleList-method | Man page |
toupper,SimpleCharacterList-method | Man page |
toupper,SimpleRleList-method | Man page |
transform,SplitDataFrameList-method | Man page |
transform.SplitDataFrameList | Source code |
trim | Man page |
trim,Views-method | Man page |
union | Man page |
union,CompressedIRangesList,CompressedIRangesList-method | Man page |
union,IntegerRanges,IntegerRanges-method | Man page |
union,IntegerRangesList,IntegerRangesList-method | Man page |
union,Pairs,missing-method | Man page |
unique,CompressedList-method | Man page |
unique,RleList-method | Man page |
unlist,CompressedList-method | Man page |
unlist,SimpleFactorList-method | Man page |
unlist,SimpleNormalIRangesList-method | Man page |
unlist,SimpleRleList-method | Man page |
unlist,Views-method | Man page |
unlist_as_integer | Source code |
unsplit,List-method | Man page |
unstrsplit,CharacterList-method | Man page |
unstrsplit,RleList-method | Man page |
updateObject,IPos-method | Man page |
update_ranges | Man page |
update_ranges,IRanges-method | Man page |
update_ranges,Views-method | Man page |
validate_Pos | Source code |
validate_Ranges | Source code |
var,AtomicList,AtomicList-method | Man page |
var,AtomicList,missing-method | Man page |
vectorToHits | Source code |
view-summarization-methods | Man page |
viewApply | Man page |
viewApply,RleViews-method | Man page |
viewApply,RleViewsList-method | Man page |
viewApply,Views-method | Man page |
viewMaxs | Man page |
viewMaxs,RleViews-method | Man page |
viewMaxs,RleViewsList-method | Man page |
viewMeans | Man page |
viewMeans,RleViews-method | Man page |
viewMeans,RleViewsList-method | Man page |
viewMins | Man page |
viewMins,RleViews-method | Man page |
viewMins,RleViewsList-method | Man page |
viewRangeMaxs | Man page |
viewRangeMaxs,RleViews-method | Man page |
viewRangeMaxs,RleViewsList-method | Man page |
viewRangeMins | Man page |
viewRangeMins,RleViews-method | Man page |
viewRangeMins,RleViewsList-method | Man page |
viewSums | Man page |
viewSums,RleViews-method | Man page |
viewSums,RleViewsList-method | Man page |
viewWhichMaxs | Man page |
viewWhichMaxs,RleViews-method | Man page |
viewWhichMaxs,RleViewsList-method | Man page |
viewWhichMins | Man page |
viewWhichMins,RleViews-method | Man page |
viewWhichMins,RleViewsList-method | Man page |
vmembers | Man page |
vmembers,H2LGrouping-method | Man page |
vmembers,ManyToOneGrouping-method | Man page |
which,CompressedLogicalList-method | Man page |
which,CompressedRleList-method | Man page |
which,SimpleLogicalList-method | Man page |
which,SimpleRleList-method | Man page |
which.max,CompressedRleList-method | Man page |
which.max,IntegerList-method | Man page |
which.max,NumericList-method | Man page |
which.max,RleList-method | Man page |
which.max,Views-method | Man page |
which.min,CompressedRleList-method | Man page |
which.min,IntegerList-method | Man page |
which.min,NumericList-method | Man page |
which.min,RleList-method | Man page |
which.min,Views-method | Man page |
whichAsIRanges | Man page Source code |
whichFirstNotNormal | Man page |
whichFirstNotNormal,IntegerRangesList-method | Man page |
whichFirstNotNormal,Ranges-method | Man page |
width | Man page |
width,CompressedRangesList-method | Man page |
width,IRanges-method | Man page |
width,MaskCollection-method | Man page |
width,NCList-method | Man page |
width,NCLists-method | Man page |
width,PartitioningByEnd-method | Man page |
width,PartitioningByWidth-method | Man page |
width,Pos-method | Man page |
width,Ranges-method | Man page |
width,RangesList-method | Man page |
width,SimpleViewsList-method | Man page |
width,Views-method | Man page |
width<- | Man page |
width<-,IRanges-method | Man page |
width<-,IntegerRangesList-method | Man page |
width<-,Views-method | Man page |
window<-,Vector-method | Man page |
window<-,factor-method | Man page |
window<-,vector-method | Man page |
window<-.Vector | Man page |
window<-.factor | Man page |
window<-.vector | Man page |
windows,Ranges-method | Man page |
with,Vector-method | Man page |
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