NEWS.md

In Bioconductor/GenomicDataCommons: NIH / NCI Genomic Data Commons Access

Changes in version 1.30.0

New features

• gdc_clinical includes clinical data from the cases.follow_ups.other_clinical_attributes entity (@LiNk-NY).

Bug fixes and minor improvements

• Removed legacy function, methods, endpoints, and arguments (@LiNk-NY)
• Use native pipe |> instead of magrittr::%>% (@LiNk-NY)

Changes in version 1.28.0

Bug fixes and minor improvements

• Defunct legacy function, methods, endpoints, and arguments (@LiNk-NY)

Changes in version 1.26.0

New features

• The GDC API has deprecated the legacy endpoint (#110, @LiNk-NY)

Changes in version 1.24.0

Bug fixes and minor improvements

• gdc_clinical handles NULL responses when diagnoses are not available for all IDs queried (#109, @zx8754).
• Minor updates to somatic mutations vignette and unit tests.

Changes in version 1.20.0

New features

• gdcdata has an ellipses argument to download data from the legacy archive, e.g., legacy = TRUE (#84, @LiNk-NY)
• missing (is MISSING) and !missing (NOT MISSING) operations implemented for filtering queries, see vignette (#96, @LiNk-NY)
• gdc-client version can be validated against last known good version based on data release (#99, @LiNk-NY)

Bug fixes and minor improvements

• gdc_clinical uses readr::type_convert to handle columns with inconsistent types from the API.
• update examples in documentation and vignette based on new data release

Bioconductor/GenomicDataCommons documentation built on Oct. 31, 2024, 7 a.m.