R/AllGenerics.R

In Bioconductor/BiocParallel: Bioconductor facilities for parallel evaluation

setGeneric("bplapply", signature=c("X", "BPPARAM"),
    function(X, FUN, ...,
             BPREDO=list(), BPPARAM=bpparam(), BPOPTIONS = bpoptions())
    standardGeneric("bplapply"))

setGeneric("bpmapply", signature=c("FUN", "BPPARAM"),
    function(FUN, ..., MoreArgs=NULL, SIMPLIFY=TRUE, USE.NAMES=TRUE,
             BPREDO=list(), BPPARAM=bpparam(), BPOPTIONS = bpoptions())
    standardGeneric("bpmapply"))

setGeneric("bpiterate", signature=c("ITER", "FUN", "BPPARAM"),
    function(ITER, FUN, ..., BPREDO=list(), BPPARAM=bpparam(),
             BPOPTIONS = bpoptions())
    standardGeneric("bpiterate"))

setGeneric("bpvec", signature=c("X", "BPPARAM"),
    function(X, FUN, ..., AGGREGATE=c, BPREDO=list(),
             BPPARAM=bpparam(), BPOPTIONS = bpoptions())
    standardGeneric("bpvec"))

setGeneric("bpvectorize",
    function(FUN, ...,
             BPREDO=list(), BPPARAM=bpparam(), BPOPTIONS = bpoptions())
    standardGeneric("bpvectorize"))

setGeneric("bpaggregate", signature=c("x", "BPPARAM"),
    function(x, ..., BPREDO=list(), BPPARAM=bpparam(), BPOPTIONS = bpoptions())
    standardGeneric("bpaggregate"))

##
## accessors
##

setGeneric("bpworkers",
    function(x) standardGeneric("bpworkers"))

setGeneric("bpworkers<-",
    function(x, value) standardGeneric("bpworkers<-"))

setGeneric("bptasks",
    function(x) standardGeneric("bptasks"))

setGeneric("bptasks<-",
    function(x, value) standardGeneric("bptasks<-"))

setGeneric("bpjobname",
    function(x) standardGeneric("bpjobname"))

setGeneric("bpjobname<-",
    function(x, value) standardGeneric("bpjobname<-"))

setGeneric("bpRNGseed",
    function(x) standardGeneric("bpRNGseed"))

setGeneric("bpRNGseed<-",
    function(x, value) standardGeneric("bpRNGseed<-"))

setGeneric("bpforceGC",
    function(x) standardGeneric("bpforceGC"))

setGeneric("bpforceGC<-",
    function(x, value) standardGeneric("bpforceGC<-"))

setGeneric("bpfallback",
    function(x) standardGeneric("bpfallback"))

setGeneric("bpfallback<-",
    function(x, value) standardGeneric("bpfallback<-"))

## errors

setGeneric("bpstopOnError",
    function(x) standardGeneric("bpstopOnError"))

setGeneric("bpstopOnError<-",
    function(x, value) standardGeneric("bpstopOnError<-"))

## logging / progress

setGeneric("bpprogressbar",
    function(x) standardGeneric("bpprogressbar"))

setGeneric("bpprogressbar<-",
    function(x, value) standardGeneric("bpprogressbar<-"))

setGeneric("bptimeout",
    function(x) standardGeneric("bptimeout"))

setGeneric("bptimeout<-",
    function(x, value) standardGeneric("bptimeout<-"))

setGeneric("bpexportglobals",
    function(x) standardGeneric("bpexportglobals"))

setGeneric("bpexportglobals<-",
    function(x, value) standardGeneric("bpexportglobals<-"))

setGeneric("bpexportvariables",
    function(x) standardGeneric("bpexportvariables"))

setGeneric("bpexportvariables<-",
    function(x, value) standardGeneric("bpexportvariables<-"))

setGeneric("bplog",
    function(x) standardGeneric("bplog"))

setGeneric("bplog<-",
    function(x, value) standardGeneric("bplog<-"))

setGeneric("bplogdir",
    function(x) standardGeneric("bplogdir"))

setGeneric("bplogdir<-",
    function(x, value) standardGeneric("bplogdir<-"))

setGeneric("bpthreshold",
    function(x) standardGeneric("bpthreshold"))

setGeneric("bpthreshold<-",
    function(x, value) standardGeneric("bpthreshold<-"))

setGeneric("bpresultdir",
    function(x) standardGeneric("bpresultdir"))

setGeneric("bpresultdir<-",
    function(x, value) standardGeneric("bpresultdir<-"))

## control

setGeneric("bpstart",
    function(x, ...) standardGeneric("bpstart"))

setGeneric("bpstop",
    function(x) standardGeneric("bpstop"))

setGeneric("bpisup",
    function(x) standardGeneric("bpisup"))

setGeneric("bpbackend",
    function(x) standardGeneric("bpbackend"))

setGeneric("bpbackend<-",
    function(x, value) standardGeneric("bpbackend<-"))

## scheduling

setGeneric("bpschedule",
    function(x) standardGeneric("bpschedule"))