BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons
The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database. Pathway Commons is a project by the Memorial Sloan-Kettering Cancer Center (MSKCC), Dana-Farber Cancer Institute (DFCI), and the University of Toronto. Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
Getting started
Browse package contents
Package details |
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| Bioconductor views | GeneSetEnrichment GraphAndNetwork KEGG Network NetworkEnrichment Pathways Reactome Software SystemsBiology |
| Maintainer | |
| License | LGPL-3 |
| Version | 1.27.4 |
| URL | https://github.com/BioPAX/paxtoolsr |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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