BgeeDB/BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee (https://bgee.org).

Getting started

Package details

Bioconductor views GeneExpression RNASeq Software
Maintainer
LicenseGPL-3 + file LICENSE
Version1.12.2
URL https://github.com/BgeeDB/BgeeCall
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("BgeeDB/BgeeCall")
BgeeDB/BgeeCall documentation built on Nov. 10, 2023, 5:40 a.m.