getNameList: Get list of pre-installed NCBI taxon names
In BIONF/PhyloProfile: PhyloProfile
View source: R/parsePhyloProfile.R
getNameList R Documentation
Get list of pre-installed NCBI taxon names
Description
Get all NCBI taxon names from
"PhyloProfile/data/taxonNamesReduced.txt"
Usage
getNameList(taxDB = NULL)
Arguments
taxDB
Path to the taxonomy DB files
Value
List of taxon IDs, their full names, taxonomy ranks and parent IDs
obtained from "PhyloProfile/data/taxonNamesReduced.txt"
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
getNameList()
BIONF/PhyloProfile documentation built on Feb. 11, 2025, 7:53 p.m.
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View source: R/parsePhyloProfile.R
| getNameList | R Documentation |
Get list of pre-installed NCBI taxon names
Description
Get all NCBI taxon names from "PhyloProfile/data/taxonNamesReduced.txt"
Usage
getNameList(taxDB = NULL)
Arguments
taxDB |
Path to the taxonomy DB files |
Value
List of taxon IDs, their full names, taxonomy ranks and parent IDs obtained from "PhyloProfile/data/taxonNamesReduced.txt"
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
getNameList()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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