AlmaasLab/micInt: Find microbial interactions

This packages utilizes different approaches to find and analyze microbial interactions. The CoNet approach utilzes similarity measures and bootstrapping-permutation methology to find significant correlations between different OTUs in a microbiome data set. The analysis are automized and run in parallel for convenient comparison of different similarity measures and methods. The Lotka-Volterra approach is based on time series and estimates the Lotka-Volterra coefficients.

install.packages("remotes")
remotes::install_github("AlmaasLab/micInt")