Global functions | |
---|---|
!,Rle-method | Man page |
!=,ANY,Vector-method | Man page |
!=,Vector,ANY-method | Man page |
!=,Vector,Vector-method | Man page |
$,List-method | Man page |
$<-,List-method | Man page |
%in%,ANY,Vector-method | Man page |
%in%,Rle,ANY-method | Man page |
%in%,Vector,ANY-method | Man page |
%in%,Vector,Vector-method | Man page |
.Call2 | Man page |
<,ANY,Vector-method | Man page |
<,Vector,ANY-method | Man page |
<,Vector,Vector-method | Man page |
<=,ANY,Vector-method | Man page |
<=,Vector,ANY-method | Man page |
<=,Vector,Vector-method | Man page |
==,ANY,Vector-method | Man page |
==,Vector,ANY-method | Man page |
==,Vector,Vector-method | Man page |
>,ANY,Vector-method | Man page |
>,Vector,ANY-method | Man page |
>,Vector,Vector-method | Man page |
>=,ANY,Vector-method | Man page |
>=,Vector,ANY-method | Man page |
>=,Vector,Vector-method | Man page |
Annotated | Man page |
Annotated-class | Man page |
Complex,Rle-method | Man page |
DataFrame | Man page |
DataFrame-class | Man page |
DataTable | Man page |
DataTable-class | Man page |
DataTable_OR_NULL | Man page |
DataTable_OR_NULL-class | Man page |
Filter,List-method | Man page |
FilterMatrix | Man page |
FilterMatrix-class | Man page |
FilterRules | Man page |
FilterRules-class | Man page |
Find,List-method | Man page |
Hits | Man page |
Hits-class | Man page |
Hits-comparison | Man page |
Hits-setops | Man page |
HitsList | Man page |
HitsList-class | Man page |
IQR,Rle-method | Man page |
LLint | Man page |
LLint-class | Man page |
List | Man page |
List-class | Man page |
List-utils | Man page |
Map,List-method | Man page |
Math,Rle-method | Man page |
Math2,Rle-method | Man page |
NA_LLint_ | Man page |
NCOL,DataTable-method | Man page |
NROW,DataTable-method | Man page |
NROW,Vector-method | Man page |
NSBS | Man page |
NSBS,NSBS-method | Man page |
NSBS,NULL-method | Man page |
NSBS,array-method | Man page |
NSBS,character-method | Man page |
NSBS,factor-method | Man page |
NSBS,logical-method | Man page |
NSBS,missing-method | Man page |
NSBS,numeric-method | Man page |
NSBS-class | Man page |
Ops,LLint,LLint-method | Man page |
Ops,LLint,numeric-method | Man page |
Ops,Rle,Rle-method | Man page |
Ops,Rle,vector-method | Man page |
Ops,numeric,LLint-method | Man page |
Ops,vector,Rle-method | Man page |
Pairs | Man page |
Pairs-class | Man page |
Position,List-method | Man page |
ROWNAMES | Man page |
ROWNAMES,ANY-method | Man page |
ROWNAMES,DataTable-method | Man page |
ROWNAMES,Vector-method | Man page |
Reduce,List-method | Man page |
Rle | Man page |
Rle,ANY-method | Man page |
Rle,Rle-method | Man page |
Rle-class | Man page |
Rle-runstat | Man page |
Rle-utils | Man page |
SelfHits | Man page |
SelfHits-class | Man page |
SelfHitsList | Man page |
SelfHitsList-class | Man page |
SimpleList | Man page |
SimpleList-class | Man page |
SortedByQueryHits | Man page |
SortedByQueryHits-class | Man page |
SortedByQueryHitsList | Man page |
SortedByQueryHitsList-class | Man page |
SortedByQuerySelfHits | Man page |
SortedByQuerySelfHits-class | Man page |
SortedByQuerySelfHitsList | Man page |
SortedByQuerySelfHitsList-class | Man page |
Summary,LLint-method | Man page |
Summary,Rle-method | Man page |
Vector | Man page |
Vector-class | Man page |
Vector-comparison | Man page |
Vector-merge | Man page |
Vector-setops | Man page |
[,DataFrame-method | Man page |
[,FilterMatrix-method | Man page |
[,FilterRules-method | Man page |
[,List-method | Man page |
[,Rle-method | Man page |
[,Vector-method | Man page |
[<-,DataFrame-method | Man page |
[<-,List-method | Man page |
[<-,Rle-method | Man page |
[<-,Vector-method | Man page |
[[,DataFrame-method | Man page |
[[,List-method | Man page |
[[<-,DataFrame-method | Man page |
[[<-,FilterRules-method | Man page |
[[<-,List-method | Man page |
active | Man page |
active,FilterRules-method | Man page |
active<- | Man page |
active<-,FilterRules-method | Man page |
aggregate | Man page |
aggregate,List-method | Man page |
aggregate,Rle-method | Man page |
aggregate,Vector-method | Man page |
aggregate,data.frame-method | Man page |
aggregate,matrix-method | Man page |
aggregate,ts-method | Man page |
aggregate-methods | Man page |
aggregate.Vector | Man page |
anyDuplicated,NSBS-method | Man page |
anyDuplicated,RangeNSBS-method | Man page |
anyDuplicated.NSBS | Man page |
anyNA,Vector-method | Man page |
append,FilterRules,FilterRules-method | Man page |
append,Rle,vector-method | Man page |
append,Vector,Vector-method | Man page |
append,vector,Rle-method | Man page |
as.LLint | Man page |
as.character,LLint-method | Man page |
as.character,Vector-method | Man page |
as.character.LLint | Man page |
as.complex,Vector-method | Man page |
as.data.frame,DataFrame-method | Man page |
as.data.frame,DataTable-method | Man page |
as.data.frame,List-method | Man page |
as.data.frame,Pairs-method | Man page |
as.data.frame,Rle-method | Man page |
as.data.frame,Vector-method | Man page |
as.data.frame.DataTable | Man page |
as.data.frame.Vector | Man page |
as.double,Vector-method | Man page |
as.env | Man page |
as.env,DataTable-method | Man page |
as.env,NULL-method | Man page |
as.env,Vector-method | Man page |
as.factor,Rle-method | Man page |
as.integer,LLint-method | Man page |
as.integer,NativeNSBS-method | Man page |
as.integer,RangeNSBS-method | Man page |
as.integer,Vector-method | Man page |
as.integer.LLint | Man page |
as.list,List-method | Man page |
as.list,Rle-method | Man page |
as.list,SimpleList-method | Man page |
as.list,Vector-method | Man page |
as.list.Vector | Man page |
as.logical,LLint-method | Man page |
as.logical,Vector-method | Man page |
as.logical.LLint | Man page |
as.matrix,DataFrame-method | Man page |
as.matrix,Hits-method | Man page |
as.matrix,HitsList-method | Man page |
as.matrix,Vector-method | Man page |
as.matrix.Vector | Man page |
as.numeric,LLint-method | Man page |
as.numeric,Vector-method | Man page |
as.numeric.LLint | Man page |
as.raw,Vector-method | Man page |
as.table,Hits-method | Man page |
as.table,HitsList-method | Man page |
as.vector,Rle-method | Man page |
as.vector.Rle | Man page |
breakTies | Man page |
by,DataTable-method | Man page |
c,FilterRules-method | Man page |
c,Hits-method | Man page |
c,LLint-method | Man page |
c,Pairs-method | Man page |
c,Rle-method | Man page |
c,SimpleList-method | Man page |
cbind,DataFrame-method | Man page |
cbind,DataTable-method | Man page |
cbind,FilterMatrix-method | Man page |
cbind,List-method | Man page |
character_OR_NULL | Man page |
character_OR_NULL-class | Man page |
chartr,ANY,ANY,Rle-method | Man page |
class:DataFrame | Man page |
class:DataTable | Man page |
class:DataTable_OR_NULL | Man page |
class:FilterRules | Man page |
class:Hits | Man page |
class:HitsList | Man page |
class:LLint | Man page |
class:List | Man page |
class:NSBS | Man page |
class:Pairs | Man page |
class:Rle | Man page |
class:SelfHits | Man page |
class:SelfHitsList | Man page |
class:SimpleList | Man page |
class:SortedByQueryHits | Man page |
class:SortedByQueryHitsList | Man page |
class:SortedByQuerySelfHits | Man page |
class:SortedByQuerySelfHitsList | Man page |
class:Vector | Man page |
class:character_OR_NULL | Man page |
class:expression_OR_function | Man page |
class:vector_OR_factor | Man page |
classNameForDisplay | Man page |
classNameForDisplay,ANY-method | Man page |
classNameForDisplay,AsIs-method | Man page |
classNameForDisplay,Hits-method | Man page |
classNameForDisplay,SelfHits-method | Man page |
classNameForDisplay,SimpleList-method | Man page |
coerce,ANY,AsIs-method | Man page |
coerce,ANY,DataFrame-method | Man page |
coerce,ANY,List-method | Man page |
coerce,ANY,SimpleList-method | Man page |
coerce,ANY,vector-method | Man page |
coerce,AsIs,DataFrame-method | Man page |
coerce,DataFrame,data.frame-method | Man page |
coerce,Hits,SortedByQueryHits-method | Man page |
coerce,List,data.frame-method | Man page |
coerce,List,list-method | Man page |
coerce,NULL,DataFrame-method | Man page |
coerce,Pairs,DataFrame-method | Man page |
coerce,Rle,character-method | Man page |
coerce,Rle,complex-method | Man page |
coerce,Rle,data.frame-method | Man page |
coerce,Rle,factor-method | Man page |
coerce,Rle,integer-method | Man page |
coerce,Rle,list-method | Man page |
coerce,Rle,logical-method | Man page |
coerce,Rle,numeric-method | Man page |
coerce,Rle,raw-method | Man page |
coerce,Rle,vector-method | Man page |
coerce,SimpleList,DataFrame-method | Man page |
coerce,Vector,DataFrame-method | Man page |
coerce,Vector,character-method | Man page |
coerce,Vector,complex-method | Man page |
coerce,Vector,data.frame-method | Man page |
coerce,Vector,double-method | Man page |
coerce,Vector,factor-method | Man page |
coerce,Vector,integer-method | Man page |
coerce,Vector,logical-method | Man page |
coerce,Vector,numeric-method | Man page |
coerce,Vector,raw-method | Man page |
coerce,Vector,vector-method | Man page |
coerce,character,LLint-method | Man page |
coerce,character,Rle-method | Man page |
coerce,complex,Rle-method | Man page |
coerce,data.frame,DataFrame-method | Man page |
coerce,data.table,DataFrame-method | Man page |
coerce,factor,Rle-method | Man page |
coerce,function,FilterClosure-method | Man page |
coerce,integer,DataFrame-method | Man page |
coerce,integer,LLint-method | Man page |
coerce,integer,List-method | Man page |
coerce,integer,Rle-method | Man page |
coerce,list,DataFrame-method | Man page |
coerce,list,List-method | Man page |
coerce,logical,LLint-method | Man page |
coerce,logical,Rle-method | Man page |
coerce,matrix,DataFrame-method | Man page |
coerce,numeric,LLint-method | Man page |
coerce,numeric,Rle-method | Man page |
coerce,raw,Rle-method | Man page |
coerce,standardGeneric,FilterClosure-method | Man page |
coerce,table,DataFrame-method | Man page |
coerce,vector,DataFrame-method | Man page |
coerce,vector,Rle-method | Man page |
coerce,xtabs,DataFrame-method | Man page |
colnames,DataFrame-method | Man page |
colnames<-,DataFrame-method | Man page |
complete.cases,DataTable-method | Man page |
cor,Rle,Rle-method | Man page |
countLnodeHits | Man page |
countLnodeHits,Hits-method | Man page |
countMatches | Man page |
countMatches,ANY,ANY-method | Man page |
countQueryHits | Man page |
countRnodeHits | Man page |
countRnodeHits,Hits-method | Man page |
countSubjectHits | Man page |
cov,Rle,Rle-method | Man page |
decode | Man page |
decode,ANY-method | Man page |
decode,Rle-method | Man page |
diff,Rle-method | Man page |
diff.Rle | Man page |
dim,DataTable-method | Man page |
dimnames,DataTable-method | Man page |
dimnames<-,DataTable-method | Man page |
droplevels,List-method | Man page |
droplevels,Rle-method | Man page |
droplevels.List | Man page |
droplevels.Rle | Man page |
duplicated,DataTable-method | Man page |
duplicated,Rle-method | Man page |
duplicated,Vector-method | Man page |
duplicated.DataTable | Man page |
duplicated.Vector | Man page |
duplicatedIntegerPairs | Man page |
duplicatedIntegerQuads | Man page |
elementMetadata | Man page |
elementMetadata,Vector-method | Man page |
elementMetadata<- | Man page |
elementMetadata<-,Vector-method | Man page |
elementNROWS | Man page |
elementNROWS,ANY-method | Man page |
elementNROWS,List-method | Man page |
elementType | Man page |
elementType,List-method | Man page |
elementType,vector-method | Man page |
end,Rle-method | Man page |
endoapply | Man page |
endoapply,List-method | Man page |
endoapply,SimpleList-method | Man page |
endoapply,data.frame-method | Man page |
endoapply,list-method | Man page |
eval,FilterRules,ANY-method | Man page |
evalSeparately | Man page |
evalSeparately,FilterRules-method | Man page |
expand | Man page |
expand,DataFrame-method | Man page |
expand,Vector-method | Man page |
expand.grid | Man page |
expand.grid,Vector-method | Man page |
expression_OR_function | Man page |
expression_OR_function-class | Man page |
extractROWS | Man page |
extractROWS,ANY,ANY-method | Man page |
extractROWS,Rle,ANY-method | Man page |
extractROWS,Rle,RangeNSBS-method | Man page |
extractROWS,classNameForDisplay,ANY-method | Man page |
extractROWS,vector_OR_factor,RangeNSBS-method | Man page |
filterRules | Man page |
filterRules,FilterMatrix-method | Man page |
findMatches | Man page |
findMatches,ANY,ANY-method | Man page |
findMatches,ANY,missing-method | Man page |
findRun | Man page |
findRun,Rle-method | Man page |
first | Man page |
first,Pairs-method | Man page |
first<- | Man page |
first<-,Pairs-method | Man page |
fold | Man page |
from | Man page |
from,Hits-method | Man page |
getListElement | Man page |
get_showHeadLines | Man page |
get_showTailLines | Man page |
gsub,ANY,ANY,Rle-method | Man page |
head | Man page |
head,Vector-method | Man page |
head.DataTable | Man page |
head.Vector | Man page |
intersect,ANY,Rle-method | Man page |
intersect,Rle,ANY-method | Man page |
intersect,Rle,Rle-method | Man page |
intersect,Vector,Vector-method | Man page |
intersect.Vector | Man page |
is.LLint | Man page |
is.na,DataTable-method | Man page |
is.na,LLint-method | Man page |
is.na,Rle-method | Man page |
is.na,Vector-method | Man page |
is.unsorted,Rle-method | Man page |
isConstant | Man page |
isConstant,array-method | Man page |
isConstant,integer-method | Man page |
isConstant,numeric-method | Man page |
isEmpty | Man page |
isEmpty,ANY-method | Man page |
isEmpty,List-method | Man page |
isRedundantHit | Man page |
isSelfHit | Man page |
isSingleInteger | Man page |
isSingleNumber | Man page |
isSingleNumberOrNA | Man page |
isSingleString | Man page |
isSingleStringOrNA | Man page |
isSorted | Man page |
isSorted,ANY-method | Man page |
isStrictlySorted | Man page |
isStrictlySorted,ANY-method | Man page |
isStrictlySorted,NSBS-method | Man page |
isStrictlySorted,RangeNSBS-method | Man page |
isTRUEorFALSE | Man page |
lapply,List-method | Man page |
lapply,SimpleList-method | Man page |
length,LLint-method | Man page |
length,NSBS-method | Man page |
length,Pairs-method | Man page |
length,RangeNSBS-method | Man page |
length,Rle-method | Man page |
length,SimpleList-method | Man page |
length,Vector-method | Man page |
lengths,Vector-method | Man page |
levels,Rle-method | Man page |
levels.Rle | Man page |
levels<-,Rle-method | Man page |
mad,Rle-method | Man page |
mad.Rle | Man page |
match,Hits,Hits-method | Man page |
match,Pairs,Pairs-method | Man page |
match,Rle,ANY-method | Man page |
matchIntegerPairs | Man page |
matchIntegerQuads | Man page |
mcols | Man page |
mcols,Vector-method | Man page |
mcols<- | Man page |
mcols<-,Vector-method | Man page |
mean,Rle-method | Man page |
mean.Rle | Man page |
median,Rle-method | Man page |
median.Rle | Man page |
mendoapply | Man page |
mendoapply,List-method | Man page |
mendoapply,SimpleList-method | Man page |
mendoapply,data.frame-method | Man page |
mendoapply,list-method | Man page |
merge | Man page |
merge,DataTable,DataTable-method | Man page |
merge,DataTable,data.frame-method | Man page |
merge,Vector,Vector-method | Man page |
merge,data.frame,DataTable-method | Man page |
metadata | Man page |
metadata,Annotated-method | Man page |
metadata<- | Man page |
metadata<-,Annotated-method | Man page |
nLnode | Man page |
nLnode,Hits-method | Man page |
nRnode | Man page |
nRnode,Hits-method | Man page |
na.exclude,DataTable-method | Man page |
na.omit,DataTable-method | Man page |
names,Pairs-method | Man page |
names,SimpleList-method | Man page |
names<-,Pairs-method | Man page |
names<-,SimpleList-method | Man page |
nchar,Rle-method | Man page |
ncol,DataFrame-method | Man page |
new2 | Man page |
nnode | Man page |
nnode,SelfHits-method | Man page |
normalizeDoubleBracketSubscript | Man page |
normalizeSingleBracketReplacementValue | Man page |
normalizeSingleBracketReplacementValue,ANY-method | Man page |
normalizeSingleBracketSubscript | Man page |
nrow,DataFrame-method | Man page |
nrun | Man page |
nrun,Rle-method | Man page |
order,Hits-method | Man page |
orderIntegerPairs | Man page |
orderIntegerQuads | Man page |
parallelSlotNames,Hits-method | Man page |
parallelSlotNames,Pairs-method | Man page |
parallelVectorNames | Man page |
parallelVectorNames,ANY-method | Man page |
parallelVectorNames,List-method | Man page |
params | Man page |
params,FilterClosure-method | Man page |
paste,Rle-method | Man page |
pc | Man page |
pcompare | Man page |
pcompare,Hits,Hits-method | Man page |
pmax,Rle-method | Man page |
pmax.int,Rle-method | Man page |
pmin,Rle-method | Man page |
pmin.int,Rle-method | Man page |
printAtomicVectorInAGrid | Man page |
quantile,Rle-method | Man page |
quantile.Rle | Man page |
queryHits | Man page |
queryHits,HitsList-method | Man page |
queryLength | Man page |
rank,Vector-method | Man page |
rbind,DataFrame-method | Man page |
rbind,DataTable-method | Man page |
rbind,FilterMatrix-method | Man page |
rbind,List-method | Man page |
recycleArg | Man page |
recycleCharacterArg | Man page |
recycleIntegerArg | Man page |
recycleLogicalArg | Man page |
recycleNumericArg | Man page |
relistToClass | Man page |
relistToClass,ANY-method | Man page |
relistToClass,Hits-method | Man page |
relistToClass,SortedByQueryHits-method | Man page |
remapHits | Man page |
rename | Man page |
rename,Vector-method | Man page |
rename,vector-method | Man page |
rep,Rle-method | Man page |
rep.int,Rle-method | Man page |
replaceROWS | Man page |
replaceROWS,ANY-method | Man page |
replaceROWS,Vector-method | Man page |
rev,Rle-method | Man page |
rev.Rle | Man page |
revElements | Man page |
revElements,List-method | Man page |
revElements,list-method | Man page |
rownames,DataFrame-method | Man page |
rownames<-,DataFrame-method | Man page |
runLength | Man page |
runLength,Rle-method | Man page |
runLength<- | Man page |
runLength<-,Rle-method | Man page |
runValue | Man page |
runValue,Rle-method | Man page |
runValue<- | Man page |
runValue<-,Rle-method | Man page |
runmean | Man page |
runmean,Rle-method | Man page |
runmed,Rle-method | Man page |
runq | Man page |
runq,Rle-method | Man page |
runsum | Man page |
runsum,Rle-method | Man page |
runwtsum | Man page |
runwtsum,Rle-method | Man page |
safeExplode | Man page |
sapply,List-method | Man page |
sd,Rle-method | Man page |
second | Man page |
second,Pairs-method | Man page |
second<- | Man page |
second<-,Pairs-method | Man page |
selfmatch | Man page |
selfmatch,ANY-method | Man page |
selfmatch,factor-method | Man page |
selfmatchIntegerPairs | Man page |
selfmatchIntegerQuads | Man page |
setListElement | Man page |
setMethods | Man page |
setValidity2 | Man page |
setdiff,ANY,Rle-method | Man page |
setdiff,Rle,ANY-method | Man page |
setdiff,Rle,Rle-method | Man page |
setdiff,Vector,Vector-method | Man page |
setdiff.Vector | Man page |
setequal,Vector,Vector-method | Man page |
setequal.Vector | Man page |
shiftApply | Man page |
shiftApply,Vector,Vector-method | Man page |
shiftApply,vector,vector-method | Man page |
shiftApply-methods | Man page |
show,DataTable-method | Man page |
show,FilterClosure-method | Man page |
show,FilterMatrix-method | Man page |
show,Hits-method | Man page |
show,LLint-method | Man page |
show,List-method | Man page |
show,Pairs-method | Man page |
show,RangeNSBS-method | Man page |
show,Rle-method | Man page |
show-utils | Man page |
showAsCell | Man page |
showAsCell,ANY-method | Man page |
showAsCell,AsIs-method | Man page |
showAsCell,Date-method | Man page |
showAsCell,LLint-method | Man page |
showAsCell,POSIXt-method | Man page |
showAsCell,Rle-method | Man page |
smoothEnds,Rle-method | Man page |
sort,Rle-method | Man page |
sort,Vector-method | Man page |
sort.Vector | Man page |
space | Man page |
space,HitsList-method | Man page |
split | Man page |
split,ANY,Vector-method | Man page |
split,Vector,ANY-method | Man page |
split,Vector,Vector-method | Man page |
split,list,Vector-method | Man page |
split-methods | Man page |
start,Rle-method | Man page |
strsplitAsListOfIntegerVectors | Man page |
sub,ANY,ANY,Rle-method | Man page |
subjectHits | Man page |
subjectHits,HitsList-method | Man page |
subjectLength | Man page |
subset,DataTable-method | Man page |
subsetByFilter | Man page |
subsetByFilter,ANY,FilterRules-method | Man page |
subsetting-utils | Man page |
substr,Rle-method | Man page |
substring,Rle-method | Man page |
summary,FilterMatrix-method | Man page |
summary,FilterRules-method | Man page |
summary,Rle-method | Man page |
summary.Rle | Man page |
svn.time | Man page |
t,Hits-method | Man page |
t,HitsList-method | Man page |
table,Rle-method | Man page |
table,Vector-method | Man page |
tabulate,Rle-method | Man page |
tail | Man page |
tail,Vector-method | Man page |
tail.DataTable | Man page |
tail.Vector | Man page |
to | Man page |
to,Hits-method | Man page |
tolower,Rle-method | Man page |
toupper,Rle-method | Man page |
transform,DataTable-method | Man page |
transform.DataTable | Man page |
union,ANY,Rle-method | Man page |
union,Hits,Hits-method | Man page |
union,Rle,ANY-method | Man page |
union,Rle,Rle-method | Man page |
union,Vector,Vector-method | Man page |
union.Vector | Man page |
unique,DataTable-method | Man page |
unique,Rle-method | Man page |
unique,Vector-method | Man page |
unique.DataTable | Man page |
unique.Vector | Man page |
unlist,List-method | Man page |
unstrsplit | Man page |
unstrsplit,character-method | Man page |
unstrsplit,list-method | Man page |
updateObject,Hits-method | Man page |
values | Man page |
values,Vector-method | Man page |
values<- | Man page |
values<-,Vector-method | Man page |
var,Rle,Rle-method | Man page |
var,Rle,missing-method | Man page |
vector_OR_factor | Man page |
vector_OR_factor-class | Man page |
which,Rle-method | Man page |
which.max,Rle-method | Man page |
width,Rle-method | Man page |
window | Man page |
window,Vector-method | Man page |
window.Vector | Man page |
within,List-method | Man page |
wmsg | Man page |
xtabs,DataTable-method | Man page |
zipdown | Man page |
zipdown,ANY-method | Man page |
zipdown,List-method | Man page |
zipup | Man page |
zipup,ANY,ANY-method | Man page |
zipup,Pairs,missing-method | Man page |
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