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kmeRs: K-Mers Similarity Score Matrix and HeatMap
Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.
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Package details |
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| Author | Rafal Urniaz [aut, cre] (<https://orcid.org/0000-0003-0192-2165>), Jason Lin [ctb] |
| Bioconductor views | Software |
| Maintainer | Rafal Urniaz <rafal.urniaz@cantab.net> |
| License | GPL-3 |
| Version | 2.1.0 |
| URL | https://github.com/urniaz/kmeRs |
| Package repository | View on CRAN |
| Installation |
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