API for STRMPS
Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data
| Global functions | |
|---|---|
| BLMM | Man page |
| STRMPSWorkflow | Man page |
| STRMPSWorkflowBatch | Man page |
| STRMPSWorkflowCollectStutters | Man page |
| extractedReadsList-class | Man page |
| extractedReadsListCombined-class | Man page |
| extractedReadsListNonCombined-class | Man page |
| extractedReadsListReverseComplement-class | Man page |
| findNeighbours | Man page |
| findNeighbours,stringCoverageGenotypeList-method | Man page |
| findStutter | Man page |
| findStutter,stringCoverageGenotypeList-method | Man page |
| flankingRegions | Man page |
| genotypeIdentifiedList-class | Man page |
| genotypeList | Man page |
| getGenotype | Man page |
| getGenotype,stringCoverageList-method | Man page |
| identifiedSTRs | Man page |
| identifyNoise | Man page |
| identifyNoise,stringCoverageList-method | Man page |
| identifySTRRegions | Man page |
| identifySTRRegions,ShortReadQ-method | Man page |
| identifySTRRegions,character-method | Man page |
| identifySTRRegions.control | Man page |
| mergeGenotypeStringCoverage | Man page |
| mergeGenotypeStringCoverage,genotypeIdentifiedList-method | Man page |
| mergeNoiseStringCoverage | Man page |
| mergeNoiseStringCoverage,noiseIdentifiedList-method | Man page |
| neighbourList-class | Man page |
| noiseIdentifiedList-class | Man page |
| noiseList | Man page |
| phredQualityProbability | Man page |
| phredQualityScore | Man page |
| solexaQualityProbability | Man page Man page |
| solexaQualityScore | Man page Man page |
| stringCoverage | Man page |
| stringCoverage,extractedReadsList-method | Man page |
| stringCoverage,extractedReadsListCombined-method | Man page |
| stringCoverage,extractedReadsListNonCombined-method | Man page |
| stringCoverage,extractedReadsListReverseComplement-method | Man page |
| stringCoverage.control | Man page |
| stringCoverageGenotypeList | Man page |
| stringCoverageGenotypeList-class | Man page |
| stringCoverageList | Man page |
| stringCoverageList-class | Man page |
| stringCoverageNoiseList-class | Man page |
| workflow.control | Man page |
