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RCPA: Consensus Pathway Analysis
Provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results (Nguyen et al. (2024) <doi:10.1002/cpz1.1036>). The package is a wrapper of the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu, Z. (2012) <https://CRAN.R-project.org/package=CePa>.
Getting started
Browse package contents
Package details |
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| Author | Ha Nguyen [aut, cre], Phi Bya [aut], Zeynab Maghsoudi [aut], Tin Nguyen [fnd] |
| Bioconductor views | AnnotationDbi Biobase BrowserViz DESeq2 GEOquery RCyjs ROntoTools SummarizedExperiment edgeR fgsea limma |
| Maintainer | Ha Nguyen <hvn0006@auburn.edu> |
| License | GPL-3 |
| Version | 0.2.3 |
| Package repository | View on CRAN |
| Installation |
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