inst/doc/BASiNET.R

In BASiNET: Classification of RNA Sequences using Complex Network Theory

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mRNA <- system.file("extdata", "sequences2.fasta", package = "BASiNET")
lncRNA <- system.file("extdata", "sequences.fasta", package = "BASiNET")
library(BASiNET)
classification(mRNA,lncRNA, save="example")

## ---- out.width = "400px"-----------------------------------------------------
knitr::include_graphics("2d.png")

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mRNApredict <- system.file("extdata", "sequences2-predict.fasta", package = "BASiNET")
lncRNApredict <- system.file("extdata", "sequences-predict.fasta", package = "BASiNET")
modelPredict <- system.file("extdata", "modelPredict.dat", package = "BASiNET")
library(BASiNET)
classification(mRNApredict,lncRNApredict,load=modelPredict)