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BASiNET: Classification of RNA Sequences using Complex Network Theory
It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
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Package details |
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| Author | Eric Augusto Ito [aut] (<https://orcid.org/0000-0002-0030-6881>), Fabricio Martins Lopes [aut, cre] (<https://orcid.org/0000-0002-8786-3313>) |
| Bioconductor views | BiologicalQuestion GenePrediction Software |
| Maintainer | Fabricio Martins Lopes <fabricio@utfpr.edu.br> |
| License | GPL-3 |
| Version | 0.0.5 |
| Package repository | View on CRAN |
| Installation |
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